BAC Information

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BAC

Clone NameMSMg01-374H20
Chromosome9 (Build37)
Map Location 29,584,351 - 29,769,757
singlet/doubletdoublet
Overlap geneHnt
Upstream geneOpcml, LOC625222
Downstream geneSnx19, LOC666478, Adamts15, Adamts8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-374H20.T7 (MSMg01no374_h20.b1)MSMg01-374H20.TJ (MSMg01no374_h20.g1)
ACCAG480273AG480274
length746764
length of high quality
(start - end)		514 (73 - 586)218 (74 - 291)
definitionCHROMAT_FILE: MSMg01no374_h20.b1 PHD_FILE: MSMg01no374_h20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:13:44 2005CHROMAT_FILE: MSMg01no374_h20.g1 PHD_FILE: MSMg01no374_h20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:13:44 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,769,244 - 29,769,757)(29,584,351 - 29,584,568)
sequence
NTTTTGACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCAGGAAATTCTTTCTAAGTTGAAAGGACAGAGGCACTAA
GAGGCGAATGCTAATTTTCGGTCTACTTATTGGCAGCGGCAGCAGCTAAG
CCAGGCTGCAGTTGCTGAGGCTGGCTTGCTCTCTGACCAGGTCTCTACAG
TGTTCGCTCTGCTCATTTCAGGTGCATTTGGGAATCTGCTTCCACCTTGA
GTCCATTTACTGCACTATGTGGTCCCTAACCCTGTGTCAGTCCTCCCATT
GTGACTTCATCCTAGCCACGAAATTAGCAGCTAGGCAGCTTGCCTTCCCT
CCGTCGTTGGGGGATCTAGGTTACCCCTTCACTATTAAAGATGTTGAAAC
TCAGAGACTGAGACAAGCTGAGAAACTTTGACAGGCTTGGTCCTGCAAGG
TTCTCCAAGGGGCTTGGAGCCTGAGGCAGGGAGGAGGGGAGGCAAGGCTC
TCCATCCAATGCAGTTGCATTCCCAGAGGAAAGTTCTGTCTGGCAGAGTG
AGAAGAGATGACAGTCCCAGGGCTGCCTCCTCCGCTCCCAGTGCAGTACA
GAGTTCTTATGATCTTGCCGAGAAACTTAAGCTATGACCCCTTCTGAGTG
ATGGGCCCTGTCCTCTACAGATCTCTATGAGGTGGCCAGAGGGACCAAGC
TGGAAGAAGAATCACATGCCAATGGTGTGCATCTTGGCTGTGGCTA

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCCAAGGATTTGCCTTGAGTGGAATAAG
GACAGGATGGGTGTAGATCCCACCAAACTCAAGAACAGGACATACTTGAA
GCGCTTAGCAAAATACAAGAGGCAGCTGAGACCTAGGAAATAATAGCATT
TTCTGTAAAATGGAGGTGACATCTCCTGCAGCACTGCCTAGGCACCCCGA
ATGTGCCCAGTGTGTTCTAAAGGAAAAGAANCTTGTGCAGGTTGAACATG
AAGAGCTGGGAGGCTTTGGATCTTGATGGGGAGTTTTGCCATCCTTCACC
CCCACCCCAGAGGCATCACGGGTAGCCATTCAGTGAGGGTACCATGGGTA
TAACAAGTACATCAATCTTGCTGAAAGAGTGCCTGGAGGTGCTTGACTTG
CTGATGGCAGTCTATGCACTTTTCAGCTTCTGCATTTCGTACAAGAAACT
CAAATATTGAGTGGGAACCCAAGTACCACTGAAGAAGGAGAAAACCAGGC
TCTTGAATCCGAGGCCCTACCCGGTTTCCTTACAGGAGGGAACTCAATCT
TTTTATAACCTTGGTGCCGAAAAGGGACGGTGCCAGAAGTTCTTCTTACG
GCGCGAGCCTGTTCTTCTAGAGTTGGGGAAGGGAGAGCGGTTCCGGCATG
GGGCGTACGGGTGGGGGCAGGGTGCTGCGCCGCNCGGGGTGGCGGGGAGT
ACCTTTACGGAGAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no374_h20.b1 MSMg01no374_h20.b1 CHROMAT_FILE:
MSMg01no374_h20.b1 PHD_FILE: MSMg01no374_h20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:13:44 2005
         (514 letters)



>mm_chr9_29769044_29769957
          Length = 914

 Score =  971 bits (502), Expect = 0.0
 Identities = 511/514 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttctaagttgaaaggacagaggcactaagaggcgaatgctaattttcggtctacttattg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 ttctaagttgaaaggacagaggcactaagaggcgaatgctaattttcggtctacttattg 655

                                                                       
Query: 61  gcagcggcagcagctaagccaggctgcagttgctgaggctggcttgctctctgaccaggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 gcagcggcagcagctaagccaggctgcagttgctgaggctggcttgctctctgaccaggt 595

                                                                       
Query: 121 ctctacagtgttcgctctgctcatttcaggtgcatttgggaatctgcttccaccttgagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 ctctacagtgttcgctctgctcatttcaggtgcatttgggaatctgcttccaccttgagt 535

                                                                       
Query: 181 ccatttactgcactatgtggtccctaaccctgtgtcagtcctcccattgtgacttcatcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 ccatttactgcactatgtggtccctaaccctgtgtcagtcctcccattgtgacttcatcc 475

                                                                       
Query: 241 tagccacgaaattagcagctaggcagcttgccttccctccgtcgttgggggatctaggtt 300
           |||||||| |||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct: 474 tagccacggaattagcagctaggcagcttaccttccctccatcgttgggggatctaggtt 415

                                                                       
Query: 301 accccttcactattaaagatgttgaaactcagagactgagacaagctgagaaactttgac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 accccttcactattaaagatgttgaaactcagagactgagacaagctgagaaactttgac 355

                                                                       
Query: 361 aggcttggtcctgcaaggttctccaaggggcttggagcctgaggcagggaggaggggagg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 aggcttggtcctgcaaggttctccaaggggcttggagcctgaggcagggaggaggggagg 295

                                                                       
Query: 421 caaggctctccatccaatgcagttgcattcccagaggaaagttctgtctggcagagtgag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 caaggctctccatccaatgcagttgcattcccagaggaaagttctgtctggcagagtgag 235

                                             
Query: 481 aagagatgacagtcccagggctgcctcctccgct 514
           ||||||||||||||||||||||||||||||||||
Sbjct: 234 aagagatgacagtcccagggctgcctcctccgct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 914
Length adjustment: 10
Effective length of query: 504
Effective length of database: 904
Effective search space:   455616
Effective search space used:   455616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no374_h20.g1 MSMg01no374_h20.g1 CHROMAT_FILE:
MSMg01no374_h20.g1 PHD_FILE: MSMg01no374_h20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:13:44 2005
         (218 letters)



>mm_chr9_29584151_29584768
          Length = 618

 Score =  400 bits (207), Expect = e-116
 Identities = 215/218 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccaaggatttgccttgagtggaataaggacaggatgggtgtagatcccaccaaactcaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 ccaaggatttgccttgagtggaataaggacaggatgggtgtagatcccatcaaactcaag 260

                                                                       
Query: 61  aacaggacatacttgaagcgcttagcaaaatacaagaggcagctgagacctaggaaataa 120
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 261 aacaggacatacttgaagcgcttagcaaaatacaagaggcagctgagtcctaggaaataa 320

                                                                       
Query: 121 tagcattttctgtaaaatggaggtgacatctcctgcagcactgcctaggcaccccgaatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagcattttctgtaaaatggaggtgacatctcctgcagcactgcctaggcaccccgaatg 380

                                                 
Query: 181 tgcccagtgtgttctaaaggaaaagaancttgtgcagg 218
           ||||||||||||||||||||||||||| ||||||||||
Sbjct: 381 tgcccagtgtgttctaaaggaaaagaaacttgtgcagg 418


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 218
Length of database: 618
Length adjustment: 9
Effective length of query: 209
Effective length of database: 609
Effective search space:   127281
Effective search space used:   127281
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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