Query= MSMg01no374_l09.b1 MSMg01no374_l09.b1 CHROMAT_FILE:
MSMg01no374_l09.b1 PHD_FILE: MSMg01no374_l09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:14:02 2005
(514 letters)
>mm_chr9_93904328_93905246
Length = 919
Score = 895 bits (463), Expect = 0.0
Identities = 500/515 (97%), Gaps = 5/515 (0%)
Strand = Plus / Minus
Query: 5 gaattctcaaaatattatgctccacagaattagataccacatagaatgtgagtgttggga 64
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 gaattctcaaaatacaatgctccacagaattagataccacatagaatgtgagtgttggga 660
Query: 65 taacaaagagtaaaggacctgagacttggagcatcatgggatcagaaaaaatatagggtg 124
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 659 taacaaagagtaaaggacctgagacttggagtatcatgggatcagaaaaaatatagggtg 600
Query: 125 attcagcatgaaaatgaaatgcatgggttaaaggggtgggatacaaaaatccactaagag 184
|||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct: 599 attcagcaggaaaatgaaatgcaggggttaaaggggtgggatacaaaaacccactaagag 540
Query: 185 tccatcacagaggaaagaggtgcctggcttgtctgtggaaggagcagtctctggaggcat 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 tccatcacagaggaaagaggtgcctggcttgtctgtggaaggagcagtctctggaggcat 480
Query: 245 tctctcaggaaaat-----gggggggcaggtgaaggtcctagatgttatcaccaaagtga 299
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 tctctcaggaaaatggggggggggggcaggtgaaggtcctagatgttatcaccaaagtga 420
Query: 300 cacctggttgatggataggctgcccccaggatggggagactctctcctccacattacaaa 359
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 419 cacctggttgatggataagctgcccccaggatggggagactctctcctccacactacaaa 360
Query: 360 catttctcccagaaagatagacaagaagaatttcagtccatgtccaataggagcatcgac 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 catttctcccagaaagatagacaagaagaatttcagtccatgtccaataggagcatcgac 300
Query: 420 agaattgactgatattttgtaactgatgtgacagactagaaaagaccatcatgcacctca 479
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 agaattgattgatagtttgtaactgatgtgacagactagaaaagaccatcatgcacctca 240
Query: 480 ctagtgacataaggtgtggtagaagaactggaaga 514
|||||||||||||||||||||||||||||||||||
Sbjct: 239 ctagtgacataaggtgtggtagaagaactggaaga 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 919
Length adjustment: 10
Effective length of query: 504
Effective length of database: 909
Effective search space: 458136
Effective search space used: 458136
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no374_l09.g1 MSMg01no374_l09.g1 CHROMAT_FILE:
MSMg01no374_l09.g1 PHD_FILE: MSMg01no374_l09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:14:02 2005
(453 letters)
>mm_chr9_93755659_93756511
Length = 853
Score = 853 bits (441), Expect = 0.0
Identities = 450/453 (99%)
Strand = Plus / Plus
Query: 1 tgaaaaacataaacttttaattgtttcatagatttttttatgtgttgaaataattatcac 60
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 201 tgaaaaacataaacttttaattgtttcagagatttttttatgtgttgaaataattatcac 260
Query: 61 ttaaaatagtttatatttctaaaatattatttcgataaaacaattacatattgataatgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttaaaatagtttatatttctaaaatattatttcgataaaacaattacatattgataatgg 320
Query: 121 gtaactaatctgtcacaatactggagtgtcattgcttaaatatcagtaagaaagaacaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtaactaatctgtcacaatactggagtgtcattgcttaaatatcagtaagaaagaacaat 380
Query: 181 ttaaaattatagtcattaattcactgaattaacattcttaaacactatttccttcatgat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 381 ttaaaattatagtcattaattcactgaattaacattcttaaacactatttccttcgtgat 440
Query: 241 ataaatatataaatgcagaaactgtaggcagccttagaacccacttctttggttctcatt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ataaatatataaatgcagaaactgtaggcagccttagaacccacttctttggttctcatt 500
Query: 301 ttcaaacatataaatgtgatatactaacagatagcaaggattgctatacgatgcaatttt 360
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttcaaagatataaatgtgatatactaacagatagcaaggattgctatacgatgcaatttt 560
Query: 361 gaaaattctgacacatattttaaaatctttattacattcattaaaactgtaatatttgga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaaaattctgacacatattttaaaatctttattacattcattaaaactgtaatatttgga 620
Query: 421 tatctgtgagacagcttagatagactaatgttg 453
|||||||||||||||||||||||||||||||||
Sbjct: 621 tatctgtgagacagcttagatagactaatgttg 653
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 453
Length of database: 853
Length adjustment: 10
Effective length of query: 443
Effective length of database: 843
Effective search space: 373449
Effective search space used: 373449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
