BAC Information

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BAC

Clone NameMSMg01-374N03
Chromosome9 (Build37)
Map Location 6,103,380 - 6,103,688
singlet/doubletsinglet
Overlap genenone
Upstream geneCasp1, Casp4, Casp12, LOC547033, LOC100039361, LOC100039372, LOC664957, LOC676037
Downstream genePdgfd, Ddi1, EG664919, LOC100039400, LOC100039418, EG547034, Dync2h1, LOC100039658
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-374N03.T7 (MSMg01no374_n03.b1)MSMg01-374N03.TJ (MSMg01no374_n03.g1)
ACCAG480522AG480523
length772750
length of high quality
(start - end)		525 (46 - 570)554 (57 - 610)
definitionCHROMAT_FILE: MSMg01no374_n03.b1 PHD_FILE: MSMg01no374_n03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:14:11 2005CHROMAT_FILE: MSMg01no374_n03.g1 PHD_FILE: MSMg01no374_n03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:14:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTGTTTATCTCTGTATCCCAGTTTTTGCTGGAGGTTATTTGAAT
TTCTGGAGTCCAGCTTCTTGAGCTCTTTGTATATATTTGGATATTAGTCC
CCTATCAGATTTAGGATTGACTTATTGACAGCATCTTTTGCCTTACAGAA
GCTTTGCAATTTTATGAGGTCCCATTTGTCAATTCTTAATCTTATAGAAC
AAGCCATTGCTGTTCTATTTAGAAATTTTTCCTTTGTGCCCATATCTTCG
AGACTTTTCCCCACTTTCGCATATAAGTTTCAGTGCCTCTAGTTTTATGT
GGAGGTCTTTGATCCACTCAGACTTGAGCTTTATAAAAGGATATATGAAT
GGGTCTTCATATTCTTCTACATGATAACTGCCAGTTGTGCCACCACCATT
TGTTGAAAATGCTGTCATTTTTCCACTGGATGGTTTTAGCTCCCTTGTCA
AAGATCAAGTGACCATTGGTGTGTAGATTCATTTCTGATCTTCAATTTTA
TTACATTGATCTACCTGTCAGCTGTTGTACCAGTAATATGCAGTTTTTAT
CACAATTGCTCTATAGCACAGCTCATGGGCAGGTATGGTTATTCCACCAG
AGATTCTTTTTTTGTTAAGAATACTTTTTGCATTCCACCCTTTTTTCTAT
TTCAAATGAGTTTGCCAATTGGCCTCTACTTTTTTAAAAATGGATTGGGA
ATATTTTTGTGGTACGGCCCTN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTTATTGCTTATATTTGAATTATAAGCCTGAACGTTCTTTTTGTG
TGTGTGTGTGTGTGTGTGTGTGATTAAAAAGGAAAAAATTCATTTTTACA
TAGCAGTGCTCAAAATAAAAAATCAAATGGCAAATATGCAAATTGGCTAT
GTGTAACTATGAGACTTTCAAACAATCCTTTCTTCAGAAGGAATAAGAAC
ATTTAAATGGCTTAGTTGAATCAAAATATGTAGATTATGAAATGTTAAAG
GACTTAGTAAAAAGTGCAACATTGCTAGAAAGAAATTTAAATAAATTAAT
TCAGTTAAATTCAAATTGTATACTTAATACTTACTTCATGATCAGTCCTG
AGCTTGCGCTGGCACTTCTTTCTATAATTTATTTAGATGGTTTACTGTAA
AATATATTCTACTCGTAGCTTCACAAACTCAAAGGAGCCTGAGAGGCTGG
CTTTGCTCTTGTGATCCTGCAGAAACTCAAAACAATGTGGCAATCTGTGT
TAAGCAACAGATTTAAAAATGGAAGTCCAGCAGTGATACAAAAATGGCCC
TGTTTCCATACTGATATAGCTTTCCTAATGCTGTGCGGCTATTGTGGATT
GAGTAAGCCATTCCAATATTGCTGTAGCAAGGAAACCTGCAAATTTAAAC
TTCCCTTAAAATGTCCTTGTGGCAACTGTTTTCTTTCATTCCTTAACCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no374_n03.g1 MSMg01no374_n03.g1 CHROMAT_FILE:
MSMg01no374_n03.g1 PHD_FILE: MSMg01no374_n03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:14:11 2005
         (554 letters)



>mm_chr9_6102978_6103932
          Length = 955

 Score =  497 bits (257), Expect = e-145
 Identities = 292/309 (94%), Gaps = 10/309 (3%)
 Strand = Plus / Minus

                                                                       
Query: 256 aagtgcaacattgctagaaagaaatttaaataaattaattcagttaaattcaaattgtat 315
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 aagtacaacattgctagaaagaaatttaaataaattaattcagttaaattcaaattgtat 652

                                                                       
Query: 316 acttaatacttacttcatgatcagtcctgagcttgcgctggcacttctttctataattta 375
           ||||||||||||||||| | |||| |||||||||||||||||||||||||||||||||||
Sbjct: 651 acttaatacttacttcaggctcagccctgagcttgcgctggcacttctttctataattta 592

                                                                       
Query: 376 tttagatggtttactgtaaaatatattctactcgtagcttcacaaactcaaaggagcctg 435
           |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 591 tttagatggtttgctgtaaaaaatattctactcgtagcttcacaaactcaaaggagcctg 532

                                                                       
Query: 436 agaggctggctttgctcttgtgatcctgcagaaact-caaaacaatgtggcaatctgtgt 494
           ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct: 531 agaggctggctttgctcttgtgatcgtgcagaaacttcaaaacaatgtggcaatctgtgt 472

                                                                       
Query: 495 taagcaacagatttaa---------aaatggaagtccagcagtgatacaaaaatggccct 545
           ||||||||||||||||         |||||||||||||||||||||||||||||||||||
Sbjct: 471 taagcaacagatttaacagatttaaaaatggaagtccagcagtgatacaaaaatggccct 412

                    
Query: 546 gtttccata 554
           |||||||||
Sbjct: 411 gtttccata 403


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 955
Length adjustment: 10
Effective length of query: 544
Effective length of database: 945
Effective search space:   514080
Effective search space used:   514080
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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