BAC Information

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BAC

Clone NameMSMg01-375G02
Chromosome9 (Build37)
Map Location 51,311,110 - 51,311,575
singlet/doubletsinglet
Overlap genenone
Upstream gene1600029D21Rik, Pts, Bcdo2, Tex12, Il18, Sdhd, Timm8b, AU019823, Pih1d2, Dlat, Dixdc1, 2310030G06Rik, Hspb2, Cryab, 1110032A03Rik, D630004A14Rik, Alg9, Ppp2r1b, Snf1lk2, Layn, 4833427G06Rik, Btg4, LOC100042825, Pou2af1, Gm684, 1810046K07Rik, LOC100042854
Downstream geneLOC640374, LOC668070, Arhgap20, LOC629554, LOC100043409, Fdx1, EG629557, Rdx, 9830163H01Rik, Zc3h12c, LOC100042876
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-375G02.T7 (MSMg01no375_g02.b1)MSMg01-375G02.TJ (MSMg01no375_g02.g1)
ACCAG480948AG480949
length786770
length of high quality
(start - end)
329 (48 - 376)466 (81 - 546)
definitionCHROMAT_FILE: MSMg01no375_g02.b1 PHD_FILE: MSMg01no375_g02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:14:57 2005CHROMAT_FILE: MSMg01no375_g02.g1 PHD_FILE: MSMg01no375_g02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:14:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTTCCCGCGTCCGCGTNCGCTATACGAATGCCTATTTCCACACGTCCG
CGGAATTCTTTGTTCTTCTTCTGAGCCCCATTTGTTAATGGGGTTATTTG
ATTTTCTGAAGTCCACCTTCTTGAGTTCGCTTTATATATGTTGGATATTA
GTCCCCTATCTGATTTAGGATAGGTAATGATCCTTTCCCAATCTGTTGCG
GGTCTTTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTCTGGA
GTTTCATTAGGTCCCATTTGTCCATTCTCGATCTTACAGTACAAGCCATT
ACTATTCTGTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTT
CCCCACTTTCTCCTCTATAAGTTTCCAGTGCCTCTGGTTTTATGTGAAGT
TCCTTGATCCACTTATATTTGACCTCCACACAAGGATATAGCTATGGATC
GATTCGCATTCTTCTACCTGATAACAACCAGTTGTCGCCGTATCATTTGC
CGATAACGCTGTCCTTTCTTCTACTGGATGGTTTTATCTTCCCTCGCCAA
ATACCCCAGTGATCCTACTAGCGTGTGTCTCCTTCCTTATATCTTCAATT
TCCCTTTCTTTTGCTCCTCCTTTGCTTTTTCTTCTTTCCCTTTTTATTTC
CAGCTTTCATCCTTTTCTGTCTCCTCCTTTTCCGCTTCCTTTTCCTACTT
CTATCGATTTTCTTTCTTATTTATTTACCTTTATTTTCTTTTACCAACCC
TTTTTCTTGTTTTCCTTCTACTCTTCTCCCTCCCCN
ATCTCCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTCCCTTCTTGTATATGTG
GCCAAATTTGCTCACTCTTTATATATTGGCTGAGAAATAATTTATCCAGA
AAAGACTTTATATTCTTCATCCCGACTAAATCCTTTTATATACTCCTGTT
ATGCGCGAAAATTCATGTAGTGATCCTCATACTTATATAACAGTTGCCTA
TTGTTTTTTCTTTAATACATGCAAAACTCAATGAGGGCTATGGTAATAAG
AGCCCTACTGTGGCTGGTCACTTGTACAGAGTCTAAAAATGCTTCACCTT
AGGTCTATAACATTCCTAATCATTTTCTGCATGCTGTTGGCTCATTAGCT
CATGTGTAACTCCATTGAAAAGTCTCATGAGTTTGTACTAGTTTTACAAA
GCAGTGGGTTTCATAATGATGTTCTTGTTCAAGAATATCTTATACATCGA
CTACATTCATTTCTCTCTCCCATCTCCCTCTGTCCCTTCCCCTTCCCCTT
CCTTAATAGCCTTCCTTCAATTTTCATGCTGTGTGTGTGCGCTGCCCTTT
ATTCCCTATCCATTTTCTATCAATAATACTTTCATTTTTTTTCATTTTTT
TTTCCACTTTTATTTTATTATTTACCCCATTACCTCCTACCTTCTATTTT
CTCCCCTTTCCTTTCCCTCCTTATTCCCTTTTTCCCCCTTTTTTCCTCCA
AACTTTATCTCTCCTTTCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no375_g02.g1 MSMg01no375_g02.g1 CHROMAT_FILE:
MSMg01no375_g02.g1 PHD_FILE: MSMg01no375_g02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:14:57 2005
         (466 letters)



>mm_chr9_51310910_51311775
          Length = 866

 Score =  862 bits (446), Expect = 0.0
 Identities = 461/466 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctcccttcttgtatatgtggccaaatttgctcactctttatatattggctgagaaataa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctcccttcttgtatatgtggccaaatttgctcactctttatatattggctgagaaataa 260

                                                                       
Query: 61  tttatccagaaaagactttatattcttcatcccgactaaatccttttatatactcctgtt 120
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 261 tttatccagaaaagactttatattcttcatcacgactaaatccttttatatactcctgtt 320

                                                                       
Query: 121 atgcgcgaaaattcatgtagtgatcctcatacttatataacagttgcctattgttttttc 180
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgcgtgaaaattcatgtagtgatcctcatacttatataacagttgcctattgttttttc 380

                                                                       
Query: 181 tttaatacatgcaaaactcaatgagggctatggtaataagagccctactgtggctggtca 240
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 381 tttaatacatgcaaaactcaatgagggctatggtaataagagtcctactgtggctggtca 440

                                                                       
Query: 241 cttgtacagagtctaaaaatgcttcaccttaggtctataacattcctaatcattttctgc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cttgtacagagtctaaaaatgcttcaccttaggtctataacattcctaatcattttctgc 500

                                                                       
Query: 301 atgctgttggctcattagctcatgtgtaactccattgaaaagtctcatgagtttgtacta 360
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 501 atgctgttggctcattagctcatgtgtaactccattgaaaagtttcatgagtttgtacta 560

                                                                       
Query: 361 gttttacaaagcagtgggtttcataatgatgttcttgttcaagaatatcttatacatcga 420
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gttttacaaagcattgggtttcataatgatgttcttgttcaagaatatcttatacatcga 620

                                                         
Query: 421 ctacattcatttctctctcccatctccctctgtcccttccccttcc 466
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctacattcatttctctctcccatctccctctgtcccttccccttcc 666


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 866
Length adjustment: 10
Effective length of query: 456
Effective length of database: 856
Effective search space:   390336
Effective search space used:   390336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)