NTTTTTTTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGG
ATCCGCGGAATTCCAGAGAATGACTAAGAATTTAGGTTTTTGAGTATGTT
TCTAGAACATTCATGTGCGTGGACACACAGGAGCACGGGTATTGTCCGCA
CAATCAACATCCAGTTTAGAGAGATGGTCTCATATCTAAGGTCAGACACC
CATGTTCCCTGTCACCCAATGCCTGGAGCTGCACAAGGGATGTGAGAACC
GAGCCAGCTGATCCCTCTGAAAGCCATGGGCAGGTCTCCGGTTGTCTGAG
CACAGACTCTCTGAGGCATAATGAGCTTCAAGCCACAATGAAAAGCCAAG
TAGAAGAGAGTCTGGTAGTTAAATGAGGCCAAAGTGACTGGTGTGTGGCG
GGACAGCTGGCCTCACGAAGAGACTCCCATTTCATCCTTAATTTGCATAT
GGTAAAGACTGATTCTCTCCCATTAATTCAAATGTATGACACATAGGTGA
CATTTAAGGCGCAATGGAGCATTTAATAGACAAACATTTTTCTCGATTAG
TATTCCCTTGACCTGGTGACCCAAAGATGAAGCCTTGCTCTCATTTCCTT
CCTATCTGTGGGAAGGTGGCAAACCAGCAGCAAGAAAATTAGCCCGACTG
TGTCCTTATCCTCCCCCTTTGGAGGGACAGTGGCTCACATAGGGGGGACT
AATATTTAAACTAAGATGGCCTTTTTGCCCCTCTTTATTAAACTTTAATT
CGCGGGTAAACTTTTTGTTATG

TTTTCAATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTCCGAAAAATCTAGTCTTGTGGGAACACCCTCAGCCTG
GTGGTGGTCATCTGCCCGCCTGTGGTACACACCTGCTCTTCCAAGGCAGC
GAAAACGGACGGTTTCAGTAAGGGCCACAGGCTTATACTATGACTGTTTT
GTGCTGTGATAGAACATCACTCAGGAAGCAAGTTTCCTGCTCAGAGAATG
CTGTGTAGAAGAGCAAGCAGGCTTGCTTTCAATTTCCTGCCTTGATGTCC
CTCAGTGATGGACCATGTCCTGTAATCATAAGCCACATGAAGCACTTCTT
CTCCAAAGTTGCTTTTGGTCTGGACGTTTTATCCCAGCAACAAAAGCGAG
ACTAGAACTGAAGAGACGGAGGCAAGAGGAGGGGGCTTTGGCAGGAATAG
TGAGATGGAGGAGGGCTTGCAGGCCATTGCGGGGGTTTTAGCTTTGGCTC
TCGATTGCAAATGATATGAACCTGTCAATTCCGACCTGAAACGTTACCTT
CTTTTTCAGCCCTTGTTACTCTTGCCTTTCGACTTCTATCTCCTTACCCT
TTATCCTTCTCCTCTTGTTCTCTTTCCCTTCTTTACCCTTCCCATCCCCT
CTAATCCCTTTTTCCTCTTTTCCTTCCTGTTTCTCCCACTATTTCTTTTT
CCATTTCTTTTCCACTTGTCAATTCTCTTCATATTTTTACCCCTTCTTTA
CTCACCATAATTCCCACAAATAATC

Query= MSMg01no375_i05.b1 MSMg01no375_i05.b1 CHROMAT_FILE:
MSMg01no375_i05.b1 PHD_FILE: MSMg01no375_i05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:15:08 2005
         (492 letters)



>mm_chr9_120612135_120613026
          Length = 892

 Score =  847 bits (438), Expect = 0.0
 Identities = 471/482 (97%)
 Strand = Plus / Plus

                                                                       
Query: 11  tccgcggaattccagagaatgactaagaatttaggtttttgagtatgtttctagaacatt 70
           |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 tccgaggaattccagagaaggactaagaatttaggtttttgagtatgtttctagaacatt 270

                                                                       
Query: 71  catgtgcgtggacacacaggagcacgggtattgtccgcacaatcaacatccagtttagag 130
           ||||||| |||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 271 catgtgcatggacacacaggagcatgggtattgcccgcacaatcaacatccagtttagag 330

                                                                       
Query: 131 agatggtctcatatctaaggtcagacacccatgttccctgtcacccaatgcctggagctg 190
           ||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||| |||
Sbjct: 331 agatggtctcatatctaaggtcagacatccatgttccctgtcagccactgcctggatctg 390

                                                                       
Query: 191 cacaagggatgtgagaaccgagccagctgatccctctgaaagccatgggcaggtctccgg 250
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 cacaagggatgtgagaaccgagccagctgatccctctgaaagccatgggcaggtctccgg 450

                                                                       
Query: 251 ttgtctgagcacagactctctgaggcataatgagcttcaagccacaatgaaaagccaagt 310
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 ttgtctgaacacagactctctgaggcataatgagcttcaagccacaatgaaaagccaagt 510

                                                                       
Query: 311 agaagagagtctggtagttaaatgaggccaaagtgactggtgtgtggcgggacagctggc 370
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 511 agaagagagtctggtagttaaatgaggtcaaagtgactggtgtgtggcgggacagctggc 570

                                                                       
Query: 371 ctcacgaagagactcccatttcatccttaatttgcatatggtaaagactgattctctccc 430
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 ctcacgaagagactcccatttcatccttaatttgcatatggtaaagactgattctctccc 630

                                                                       
Query: 431 attaattcaaatgtatgacacataggtgacatttaaggcgcaatggagcatttaatagac 490
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 attaattcaaatgtatgacacataggtgacatttaaggcgcaatggagcatttaatagac 690

             
Query: 491 aa 492
           ||
Sbjct: 691 aa 692


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 892
Length adjustment: 10
Effective length of query: 482
Effective length of database: 882
Effective search space:   425124
Effective search space used:   425124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no375_i05.g1 MSMg01no375_i05.g1 CHROMAT_FILE:
MSMg01no375_i05.g1 PHD_FILE: MSMg01no375_i05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:15:08 2005
         (336 letters)



>mm_chr9_120768058_120768793
          Length = 736

 Score =  611 bits (316), Expect = e-179
 Identities = 331/336 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctagtcttgtgggaacaccctcagcctggtggtggtcatctgcccgcctgtggtacacac 60
           ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct: 395 ctagtcttgtgggaacaccctcagcctggcggtggtcatctgcctgcctgtggtacacac 336

                                                                       
Query: 61  ctgctcttccaaggcagcgaaaacggacggtttcagtaagggccacaggcttatactatg 120
           |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct: 335 ctgctcttccaaggcagcgaaaacggacggtttcagtaagggccgcgggcttatactatg 276

                                                                       
Query: 121 actgttttgtgctgtgatagaacatcactcaggaagcaagtttcctgctcagagaatgct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 actgttttgtgctgtgatagaacatcactcaggaagcaagtttcctgctcagagaatgct 216

                                                                       
Query: 181 gtgtagaagagcaagcaggcttgctttcaatttcctgccttgatgtccctcagtgatgga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 gtgtagaagagcaagcaggcttgctttcaatttcctgccttgatgtccctcagtgatgga 156

                                                                       
Query: 241 ccatgtcctgtaatcataagccacatgaagcacttcttctccaaagttgcttttggtctg 300
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 ccatgtcctggaatcataagccacatgaagcacttcttctccaaagttgcttttggtctg 96

                                               
Query: 301 gacgttttatcccagcaacaaaagcgagactagaac 336
           ||||||||||||||||||||||||||||||||||||
Sbjct: 95  gacgttttatcccagcaacaaaagcgagactagaac 60


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 336
Length of database: 736
Length adjustment: 9
Effective length of query: 327
Effective length of database: 727
Effective search space:   237729
Effective search space used:   237729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)