Query= MSMg01no376_c04.b1 MSMg01no376_c04.b1 CHROMAT_FILE:
MSMg01no376_c04.b1 PHD_FILE: MSMg01no376_c04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:15:57 2005
(570 letters)
>mm_chr9_15245249_15246218
Length = 970
Score = 640 bits (331), Expect = 0.0
Identities = 352/359 (98%), Gaps = 1/359 (0%)
Strand = Plus / Minus
Query: 210 gtcccttgtttgattctatcacttgaggagatctgtatctgggcaagatatcctctagta 269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 970 gtcccttgtttgattctatcacttgaggagatctgtatctgggcaagatatcctctagta 911
Query: 270 actttttaacttttgtatctgggtcttcatcgggaatgcctctgtccatgca-agaaggt 328
|||||||||||||||||| ||||||||||||||||||||||||||| ||||| |||||||
Sbjct: 910 actttttaacttttgtatttgggtcttcatcgggaatgcctctgtcaatgcagagaaggt 851
Query: 329 atccatgagccccagcaagtagttgtaaccagacttccctgttttgatttttgtaaaatc 388
||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||
Sbjct: 850 atccatgagccccagcaagtactcgtaaccagacttccctggtttgatttttgtaaaatc 791
Query: 389 aacttcctagtaggcccctggtctctaacctcatagtggagagcctggatgtctgggagt 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 790 aacttcctagtaggcccctggtctctaacctcatagtggagagcctggatgtctgggagt 731
Query: 449 gttacgggtctgcagcttgacactatagtctcaatagtattctgcatgtccttgacagtc 508
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 730 gttacgggtctgcagcttgacactatagcctcaatagtattctgcatgtccttgacagtc 671
Query: 509 accttagaatgtctcactgtgttggccatccatctcactcccatgcgagtgactttgtg 567
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 accttagaatgtctcactgtgttggccatccatctcactcccatgcgagtgactttgtg 612
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 970
Length adjustment: 10
Effective length of query: 560
Effective length of database: 960
Effective search space: 537600
Effective search space used: 537600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no376_c04.g1 MSMg01no376_c04.g1 CHROMAT_FILE:
MSMg01no376_c04.g1 PHD_FILE: MSMg01no376_c04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:15:57 2005
(496 letters)
>mm_chr9_15118335_15119230
Length = 896
Score = 959 bits (496), Expect = 0.0
Identities = 496/496 (100%)
Strand = Plus / Plus
Query: 1 aactgttcaactgctgaatgagccaaacatgaactaacattaactctgacagaactggct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aactgttcaactgctgaatgagccaaacatgaactaacattaactctgacagaactggct 260
Query: 61 gcagctggtaatcatagtaaccttggcagtttttataactgaaatgacagcctttttaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcagctggtaatcatagtaaccttggcagtttttataactgaaatgacagcctttttaaa 320
Query: 121 agtcatgtgttgttctctaggaatggatatgagaagaccctaaagagatgtttggtaagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtcatgtgttgttctctaggaatggatatgagaagaccctaaagagatgtttggtaagt 380
Query: 181 aactagttttgttttttgtataaagaattgtagatctccaggtcgcatgtaagttctcag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aactagttttgttttttgtataaagaattgtagatctccaggtcgcatgtaagttctcag 440
Query: 241 aaaaacatttgctatgtgtacaacctagaaagtcgtcctcactttgctaggctagtacaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaaaacatttgctatgtgtacaacctagaaagtcgtcctcactttgctaggctagtacaa 500
Query: 301 gtacatcactcaaatgccaaatcagaataactagaaatgttcattcagtagggataaaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtacatcactcaaatgccaaatcagaataactagaaatgttcattcagtagggataaaaa 560
Query: 361 gatacaccatgtactagtcccacacctaaaattctatgagttgagagtctgaggtgagaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gatacaccatgtactagtcccacacctaaaattctatgagttgagagtctgaggtgagaa 620
Query: 421 gtttcaagtacaatctgagaaatggaaactttgtctcaagatcaaattcttggctgggta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtttcaagtacaatctgagaaatggaaactttgtctcaagatcaaattcttggctgggta 680
Query: 481 gctggcacagtaaata 496
||||||||||||||||
Sbjct: 681 gctggcacagtaaata 696
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 896
Length adjustment: 10
Effective length of query: 486
Effective length of database: 886
Effective search space: 430596
Effective search space used: 430596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
