BAC Information

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BAC

Clone NameMSMg01-377B17
Chromosome9 (Build37)
Map Location 73,847,070 - 73,847,432
singlet/doubletsinglet
Overlap genenone
Upstream geneCcpg1, Pigb, Rab27a, 2410004A20Rik, BC003885, EG436081, Unc13c
Downstream geneWdr72, Nr1h2-ps, LOC100040764, Onecut1, BC031353
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-377B17.T7 (MSMg01no377_b17.b1)MSMg01-377B17.TJ (MSMg01no377_b17.g1)
ACCAG482266AG482267
length791769
length of high quality
(start - end)
449 (47 - 495)365 (77 - 441)
definitionCHROMAT_FILE: MSMg01no377_b17.b1 PHD_FILE: MSMg01no377_b17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:17:11 2005CHROMAT_FILE: MSMg01no377_b17.g1 PHD_FILE: MSMg01no377_b17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:17:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTCAACTGACCGATACCGAATGGGCTGAGAAGCACCTGAAAAAAT
GTTCAACATCCTTAATCATTGGGGAAATGCAAATCAAAACAACCCTGAGA
TTCCACTTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAA
CAGATGCTGGCAGGGATGTGGAGAAAGAGGAACACTCCTCCATCACTGGT
GGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCAGTTCCTC
AGAAAATTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTAGT
CATATATCCAGAAGATGTTCCAACTGGTAATAAGAACACATGCTCCACTA
TGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGA
TGTCCCTCAACAGAGGAATGGATACAGAAAATGTGGAACATTTACCCAAT
TGGAGTACTACTCAGCTATTAAAAACAATGAATTGATGAAATTCTTACGC
AAATGGAAGGACCTGGAAGGGATCATCCTGAAGCGAGGTACCTAACCCCA
AATTTGCCTTCTTTGATATTCTTTCCCTCGATATGGGCATATTAACCCTC
AACATTATAATACACCACTATACCCATTTGGCCACACTTTGTTACCCCTC
CAAAAAAGACATTATATATAGTGTGGCAATACTTTTTCTCCCTCCCTTAA
AAATTCCGTAATTACCACTCCTTTTCCCCTATTTCCTATTG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGAGGCGTGGACATGGGCCTGACT
TAAGTTCCACAGTTTGGAACTCATCCTTCCTTCAAGAAAGGCTGTTGAGT
CAAGGCCTTTCCCACTCATCCCTAACTATGTCTTGCACTAATTAGGTGCT
ACTCTAGGTGGTGGATATGTGGCAATTGGTAAGACACAGTTCTTTCTCTC
AAGGGCCATATATTGTAGTGTGTGTTGGGAGGCACAGTCGATTGCATGGG
ATAACTGTTTCCCAGGTAACTGCAGTACAGAGGCTTGGTGTCTTGCTAAA
GAGTTTCCCGTGCTTTAGCTTGACAAGTCTTGGTTCCGTGTGGAGGATGG
CCACAGACTGCCTTAGTATGAGATCCTTTATCTGGATTATGTGGTTAATG
CTTGCACACCTTTCCAAACTCTAGGTCTCTTCCTACTTGTTGGAAGGGGA
AATGAACCGACATTTTAAAATTTATGATACCTACTTGGTAATCACCCCTT
TCCAACGTGATTTGAGAACCTTCAGATTTCACTTACATTTTCTGCTTACT
TACTTGTTTTATAACATAAATGTTATTTTTCCCCCCCACTTTTCCACCCT
TTCCTTTTTTTCTCTTTTTTTCTTCTCCTATTTTCTACTTCTTACAATTT
TTCTTTTTCCCTTTTTCTCCCCCTCTTTCTCCCCCCTCATCACTTTTTTT
CTTTTTATTTTTCTCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no377_b17.g1 MSMg01no377_b17.g1 CHROMAT_FILE:
MSMg01no377_b17.g1 PHD_FILE: MSMg01no377_b17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:17:11 2005
         (365 letters)



>mm_chr9_73846870_73847634
          Length = 765

 Score =  694 bits (359), Expect = 0.0
 Identities = 362/363 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaggcgtggacatgggcctgacttaagttccacagtttggaactcatccttccttcaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 agaggcgtggacatgggcctgacttaagttccacagtttggaactcatccttccttcaag 504

                                                                       
Query: 61  aaaggctgttgagtcaaggcctttcccactcatccctaactatgtcttgcactaattagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 aaaggctgttgagtcaaggcctttcccactcatccctaactatgtcttgcactaattagg 444

                                                                       
Query: 121 tgctactctaggtggtggatatgtggcaattggtaagacacagttctttctctcaagggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tgctactctaggtggtggatatgtggcaattggtaagacacagttctttctctcaagggc 384

                                                                       
Query: 181 catatattgtagtgtgtgttgggaggcacagtcgattgcatgggataactgtttcccagg 240
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 catatattgcagtgtgtgttgggaggcacagtcgattgcatgggataactgtttcccagg 324

                                                                       
Query: 241 taactgcagtacagaggcttggtgtcttgctaaagagtttcccgtgctttagcttgacaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 taactgcagtacagaggcttggtgtcttgctaaagagtttcccgtgctttagcttgacaa 264

                                                                       
Query: 301 gtcttggttccgtgtggaggatggccacagactgccttagtatgagatcctttatctgga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 gtcttggttccgtgtggaggatggccacagactgccttagtatgagatcctttatctgga 204

              
Query: 361 tta 363
           |||
Sbjct: 203 tta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 365
Length of database: 765
Length adjustment: 9
Effective length of query: 356
Effective length of database: 756
Effective search space:   269136
Effective search space used:   269136
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)