BAC Information

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BAC

Clone NameMSMg01-377E05
Chromosome9 (Build37)
Map Location 38,793,037 - 38,793,506
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr881, Olfr882-ps1, Olfr883, Olfr884, Olfr1550-ps1, Olfr885, Olfr886-ps1, Olfr887, Olfr888, Olfr889, Olfr890, Olfr891, Olfr892-ps1, Olfr893, Olfr894, Olfr143, Olfr895, Olfr896-ps1, Olfr897-ps1, Olfr25, Olfr898, Olfr899, Olfr900, Olfr147, Olfr901, Olfr902, Olfr903-ps1, Olfr904, Olfr905, Olfr906, Olfr907, Olfr908, Olfr909, Olfr910, Olfr912, Olfr913, Olfr914, Olfr915, Olfr916, Olfr917, Olfr918, GA_x5J8B7W60AJ-925630-926226, Olfr919, Loh11cr2a, Olfr920, Olfr921, Olfr922, Olfr923, Olfr924, Olfr26, Olfr925-ps1, Olfr926, GA_x5J8B7W60AJ-719102-719883, Olfr928-ps1, GA_x5J8B7W60AJ-703922-704828, Olfr930, GA_x5J8B7W60AJ-666029-666595, Olfr1545-ps1, Olfr932-ps1, Olfr933, Olfr934
Downstream geneOlfr935, Olfr146, EG628171, Olfr937, LOC667260, Olfr938, Olfr939-ps1, GA_x5J8B7W60AJ-540286-540740, Olfr941-ps1, Olfr27, Olfr942-ps1, Olfr943, Olfr944, Olfr144, Olfr945, GA_x5J8B7W60AJ-354484-355428, Olfr947-ps1, Olfr948, LOC667312, Olfr949-ps1, Olfr950-ps1, Olfr951, Olfr952, Olfr953-ps1, Olfr954, Olfr955, Olfr956-ps1, Olfr44, Olfr957, Olfr958, Olfr959, AW551984, Olfr148, Olfr960, Olfr961, GA_x5J8B7W60AJ-4787-4010, Olfr963, Olfr964-ps1, Olfr149, Olfr965, Olfr966-ps1, Olfr150, Olfr967, Olfr968, Olfr969, Olfr970, Olfr971, Olfr972, Olfr973, LOC100043015, Olfr974, Olfr975, Olfr976, Olfr977-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-377E05.T7 (MSMg01no377_e05.b1)MSMg01-377E05.TJ (MSMg01no377_e05.g1)
ACCAG482386AG482387
length744756
length of high quality
(start - end)		451 (50 - 500)471 (81 - 551)
definitionCHROMAT_FILE: MSMg01no377_e05.b1 PHD_FILE: MSMg01no377_e05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:17:23 2005CHROMAT_FILE: MSMg01no377_e05.g1 PHD_FILE: MSMg01no377_e05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:17:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNTTTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTCAGTTTTCGTTTGATACTCCATTTTTTTTTGATTGGGTTG
TTTGGGGTTTTGGTGGCTAGCTTCTTGAGTTCTTTATACATTTTGGAATA
TTAGCCCACTATCGAATGTTGGGTTAGTAAAGATGCTTTTTCCCAATGTG
TAGGTGGCTAAATTGTCTTAAAGGCTTTGTCTTTTGCCTTACAGAAACAT
TCCAGTTTCATGAGGGTGGATTTACCAATTCTTGATCTTAGAGCATGAGC
CATTGGGATTCTGTTTATGAATTTTTCCCCTGTGCCAAAGAGTTCGAGGC
TCTTTCCCAATTTCTCTTCTATTAGATTCAGTATATCAGGTTTTATGTTG
AGGTCCTTGATCCACTTGGACTTGAGCTTTGCACGGTGACAAATATGGGT
CTATTTTCATTTTTCTACATATTGACAGACAGACCAGCACCATTTTGTAG
CCTCCCACAAGCCTGAAGCAGGCTGAGCCAGACCTTAACTTTGCTTACCA
CTAAGGAGATCACCTATGGTGGAGCCTGCCTCCCTGGACCACTCTATTGT
TCTGCCACTGCTGCTGCTGCTACCTGGTGGGAGTTGGCCCAGCTGTCCCC
AAATCTCATCCGATCCTACCCTGCGCTTCCGCCTTTCGGCCCCAAGAAGA
TTTGTCAGGAAGGTCTTTTTTTCTTCCCTATTAACATGCTTTCN

NNTCGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAACACTTGTCTTATGTTC
ATGTTTCAATGGGCCCTTGGTGACAAAAGAATATAGAGCACTATAAAGGA
TTTGCAGGTAGTTCTAGAAGCATTGCCTATGAAGGAAAACAGGTATGATT
GACTGGTACTAGCTCTTTTGAGTACACAAGAAAGCAAACACAAATCAATG
ATGTCTGGAGATTTTCAACACAATCTAGAATCTAAATAACTCATGAAATA
TTTTGACTGAAAATCTAAAAAAGCAAATAAGAAAATGTCATAAATTCCCA
GACATTAGATCTGAGATAACACAGGTATTATTTTTGATATTACATTTATT
ATAATGTTCCATGAGGTAAGGATAATGATATAGAGATTTGAAATGAAATA
TATAGAAAGATAGTCTGCCACAATAGAAACACATAAAAACTCAAGACAAA
AATTGACATTGAAAATATAATGAATGTTTAAAAATAGATACATTTAATAT
GAAATTAGCAGTCCTAGCCATTTACTAAAGGAAAGAACACCAAATGGGGG
AGATGTGTTGAAGAACAAATCAATTTTCCCATTTGTAAATAATCTCTAAG
ATCCCCCGGAAATCCTATATTTAAAATAGTTTATTTTGGAAATATTTAAA
AAAATGGTGAAAATACCCCGCCTTTTGTTTTTACAAACCATTAGGAATTA
TATTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no377_e05.g1 MSMg01no377_e05.g1 CHROMAT_FILE:
MSMg01no377_e05.g1 PHD_FILE: MSMg01no377_e05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:17:23 2005
         (471 letters)



>mm_chr9_38792837_38793707
          Length = 871

 Score =  818 bits (423), Expect = 0.0
 Identities = 459/471 (97%), Gaps = 2/471 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaacacttgtcttatgttcatgtttcaatgggcccttggtgacaaaagaatatagagca 60
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaacacttgtcttatattcatgtttcaatgggcccttggtgacaaaagaatatagagca 260

                                                                       
Query: 61  ctataaaggatttgcaggtagttctagaagcattgcctatgaaggaaaacaggtatgatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctataaaggatttgcaggtagttctagaagcattgcctatgaaggaaaacaggtatgatt 320

                                                                       
Query: 121 gactggtactagctcttttgagta-cacaagaaagcaaacacaaatcaatgatgtctgga 179
           |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct: 321 gactggtactagctcttttgagtaacacaagaaagcaaacacaaatcaatgatgtccgga 380

                                                                       
Query: 180 gattttcaacacaatctagaatctaaataactcatgaaatattttgactgaaaatctaaa 239
            ||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct: 381 aattttcagcacaatctagaatataaataactcatgaaatattttgagtgaaaatctaaa 440

                                                                       
Query: 240 aaagcaaataagaaaatgtcataaattcccagacattagatctgagataacacaggtatt 299
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 441 aaagcaaataagaaaatgtcataaattcccagacattagatctgaggtaacacaggtatt 500

                                                                       
Query: 300 atttttgatattacatttattataatgttccatgaggtaaggataatgatatagagattt 359
           |||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct: 501 atttttgatattacatttattataatgttcca-gaggtaaggaaaatgatatagagattt 559

                                                                       
Query: 360 gaaatgaaatatatagaaagatagtctgccacaatagaaacacataaaaactcaagacaa 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 560 gaaatgaaatatatagaaagatagtctgccacaatagaaacacataaaaacacaagacaa 619

                                                              
Query: 420 aaattgacattgaaaatataatgaatgtttaaaaatagatacatttaatat 470
           |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 620 aaattgacattgaaaatataatgaatgtttaaaaataggtacatttaatat 670


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 871
Length adjustment: 10
Effective length of query: 461
Effective length of database: 861
Effective search space:   396921
Effective search space used:   396921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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