BAC Information

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BAC

Clone NameMSMg01-377F01
Chromosome9 (Build37)
Map Location 93,943,335 - 93,943,766
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC674371
Downstream geneLOC384967, EG384968, 1190002N15Rik, EG667601, Slc9a9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-377F01.T7 (MSMg01no377_f01.b1)MSMg01-377F01.TJ (MSMg01no377_f01.g1)
ACCAG482426AG482427
length770754
length of high quality
(start - end)
431 (49 - 479)406 (83 - 488)
definitionCHROMAT_FILE: MSMg01no377_f01.b1 PHD_FILE: MSMg01no377_f01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:17:27 2005CHROMAT_FILE: MSMg01no377_f01.g1 PHD_FILE: MSMg01no377_f01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:17:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NGGTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTAAGTATGGCATGCAATTGTTTTGTTTTGTTTTGTTTCTTTG
TTTCTTTGTTTGTTTTTCACATAGGATACCAATTTGAAAAATAATACTTT
TTGGTCTGTTTTTTCCTTCTTGTTCTCGTTCTCGTTCTCATTCTCCTTCT
CCTTCTTCATTCTTTTCTCTTAAAGATCAATCCTTCTTCCTATTCGGCTT
CATCTACAGCAGATCTCAGGAATGTGAAGCAACTAACAAGAGCAACAATA
ATAAAAATACTCAGACCTTTCATTGCTCTCTGATGCTGCCCTCCAAGACT
CTTCGATTCAATATTAAATCTTTACAATTCCCCAGGGAACCAATAATAGA
AAAACCTTACGTTTTACAGGCAGCCCTTCCTCTAACTGCGCTTGCTCTGA
TATTAATCCTTGTATTTTCCCTGGCTGCCTCATCTCAACAAATTTAATTT
AAAATCATTTTAAAACTCTGACATAAAACCTGTAGCTACTCCTTTTATAA
TCGTTTTGATTCTTGGATATATAAGTTTCTCTTTAGTCTGCTTGGTGACT
TATTTGGCCCGGTTTACTTGTCTACTTTGCTAGGGGGGAAAAGGCCTTCT
GTAAACATAATTCTAAATTCAAAAAAACCTTATCTGAGACCCCATTTTTA
ATATTTGGTGGAACCCCCCCTTCTTCCTACACCAAACTTTATGGCACTTC
CTTATCACATTTTCGTATTN
TTTTTCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCTCTGAAGAAACAGAC
TGGGAGGAAGAAGCAGCTCATTACCAGCCAGATAAAGTGCTAGCTAATCG
GTCAAGAAAAAAGCCAAAAGCGGCTGGCGAAAGCCAGCATGCTGTTCAGC
CTCCGGGCAGTCGGCTTCAAGGTCCGCCCTATGCGGAGCCCCCGCCCTGC
GTAGTGCGTCAGCCCTGCGCAGAGAGACAATGTGCAGAGAGACAATGCGC
AGAGAGGCAATGCGCAGACTCATTCATTCCCAGAGAGGAACAAAGGAAAA
TACAACAGGCATTTCCGGTCTTTGAAGGAGCCGAGGGTGGGCGTGTCCAC
GCTCCGGCAGAATATGTGCAGATTAAAGAACTTGCCGAGTCGGTCCATAA
ATACGGAATTAATGCTAATTTTACCTTGGTGCAGTTAGACAGGCTTGCCG
GCATGGCACTATCTCCTGCCGACTGCCAAACGATTGTAACACCCGTTCTC
CCTAGTATGGGCAATTATATGCAATGCATAGCTCTTTGTGCAGCAGTTGT
TTCCACCCACGCCTTCACCCCCCCCCACAGTACTCGCCCTCTCATCATGA
TCTATTGTTCCGTTTGATTCTGCCCACCGCTCCCATTATCTCATTCTCTT
TTTCTCCCTCTTTTCCCACCCCCCTCTTCTATATTCCTTATTTTCCACCC
CCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no377_f01.b1 MSMg01no377_f01.b1 CHROMAT_FILE:
MSMg01no377_f01.b1 PHD_FILE: MSMg01no377_f01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:17:27 2005
         (431 letters)



>mm_chr9_93942977_93943807
          Length = 831

 Score =  785 bits (406), Expect = 0.0
 Identities = 424/432 (98%), Gaps = 4/432 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   gaattcttaagtatggcatgcaattgttttgttttgttttgtttc----tttgtttcttt 59
           ||||||||||||| |||||||||||||||||||||||||||||||    ||||||| |||
Sbjct: 790 gaattcttaagtaaggcatgcaattgttttgttttgttttgtttctttgtttgtttgttt 731

                                                                       
Query: 60  gtttgtttttcacataggataccaatttgaaaaataatactttttggtctgttttttcct 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 gtttgtttttcacataggataccaatttgaaaaataatactttttggtctgttttttcct 671

                                                                       
Query: 120 tcttgttctcgttctcgttctcattctccttctccttcttcattcttttctcttaaagat 179
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 tcttgttctcattctcgttctcattctccttctccttcttcattcttttctcttaaagat 611

                                                                       
Query: 180 caatccttcttcctattcggcttcatctacagcagatctcaggaatgtgaagcaactaac 239
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 610 caatccttcttcctattcggcttcatctacagcagatctcaggaatgtgaggcaactaac 551

                                                                       
Query: 240 aagagcaacaataataaaaatactcagacctttcattgctctctgatgctgccctccaag 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 aagagcaacaataataaaaatactcagacctttcattgctctctgatgctgccctccaag 491

                                                                       
Query: 300 actcttcgattcaatattaaatctttacaattccccagggaaccaataatagaaaaacct 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 actcttcgattcaatattaaatctttacaattccccagggaaccaataatagaaaaacct 431

                                                                       
Query: 360 tacgttttacaggcagcccttcctctaactgcgcttgctctgatattaatccttgtattt 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 tacgttttacaggcagcccttcctctaactgcgcttgctctgatattaatccttgtattt 371

                       
Query: 420 tccctggctgcc 431
           ||||||||||||
Sbjct: 370 tccctggctgcc 359


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 431
Length of database: 831
Length adjustment: 9
Effective length of query: 422
Effective length of database: 822
Effective search space:   346884
Effective search space used:   346884
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)