BAC Information

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BAC

Clone NameMSMg01-378J03
Chromosome9 (Build37)
Map Location 20,274,444 - 20,455,371
singlet/doubletdoublet
Overlap geneZfp426, 5730601F06Rik, 7030419G21Rik, LOC100041205, 2210010B09Rik, 5730577I03Rik, Fbxl12, Ubl5
Upstream geneOlfr850, Olfr851, Olfr852-ps1, Olfr853, Olfr854, Olfr855, Zfp75, EG624341, LOC665751, Olfr857, Olfr858-ps1, Olfr58, Olfr859, Olfr860, GA_x5J8B7W6RL5-13004417-13003354, Olfr862, Olfr77, EG665823, Olfr863-ps1, Olfr864-ps1, Olfr865-ps1, Olfr866, Olfr867, Olfr868, Olfr869, Olfr870, Olfr871, Olfr872, Olfr39, Olfr873, Olfr18, Zfp560, 4921534A09Rik, EG624824, Zfp26
Downstream genePin1, Olfm2, Col5a3, Rdh8, A230050P20Rik, Angptl6, Ppan, Eif3s4, Dnmt1, Edg5, Mrpl4, Icam1, Icam4, Icam5, Glp1, B230118G17Rik, Raver1, Tyk2, Cdc37, Pde4a, Keap1, Edg8, Atg4d, BC021438, Cdkn2d, Ap1m2, Slc44a2, Ilf3, Qtrt1, Dnm2, Tmed1, AB124611, Carm1, Yipf2, 1810026J23Rik, EG666043, Smarca4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-378J03.T7 (MSMg01no378_j03.b1)MSMg01-378J03.TJ (MSMg01no378_j03.g1)
ACCAG483386AG483387
length757759
length of high quality
(start - end)		574 (50 - 623)568 (78 - 645)
definitionCHROMAT_FILE: MSMg01no378_j03.b1 PHD_FILE: MSMg01no378_j03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:19:05 2005CHROMAT_FILE: MSMg01no378_j03.g1 PHD_FILE: MSMg01no378_j03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:19:05 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,274,444 - 20,275,013)(20,454,806 - 20,455,371)
sequence
NNCCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTTTCATGTCTGCGAAGTGAACGAGGATGACTGTAGGCTTTT
CCACACTGCTGACACTTATAGGGTTTCTCTTCAGTGTGGGTGTGACTTAT
TTCATGAATCCTGAAGGAACTGGGACAGATGAAGGCTTTCCCACACTCCT
TACATTCATAGGGCTTCTCTCCAGTGTGGGTTCTTTCATGGATCTGAAAT
GAAGTGGAGTGACTGAAGGCTTTCCCACACTGTTTACACTCATAGGGTTT
TTCTCCAGTGTGGATTCGCATGTGAATTTTAAGGTGGGTGGAATAGTTAA
AGGCCTTCCCACACTCCTTGCACGTGTATGATTTTTTAGCATTGTGAGTT
CTCATGTGGTTATTAAGACATGAAAGATATCCAAATGCTTTCCCACAAAT
CTTGCACTCACAGGTCTTCTCTTCAGCATGCAACTTCAGATGCCCATTAA
GGTTGGAAGAAATAGCAAAGGCTTTCCCACATTTCACACACACAAAAGGC
TTCTCTCCTGTGTGAGTTCTTATATGTTGGATCAGTCGAGAGGATGTAAG
GAAGGCTTTCCCGCACTCCTTACATCCATAGGGCTTGTCTCCATTGTGAG
ACCTTACATGGATACTAAGAACTGAGTGCTGAGTGGAAGCTTTCCCACAC
TGATTACATACATAGGGCTTTCTCTCCTGTGTGAGTTCTTCCATGAACTG
AAATGAA

NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGACAGCCAGAGTTACACAGA
GAAACCCTAGCTCCAGAATTTTTTTTTAAAGTTACTTTACAAAAGATTAC
ATTTATAAGGGATACTGCCAAGAAAACTGTAGTCAAGAGCACAATTTGTG
GCAATCTGATCTCTCCTTTCACCATGGGATTCTGGAGGTCAAACTAAAGT
TGTCAGGCTTCGTGGCAAGTTACCAGTCTTGCTGGCCCTAGATAATTAAT
GATTTTCAAAGACACTGATGGGGGAGGGGTTCAATGAGTTCACCAATAGT
GTAAACCTCTGTGTGACTTAAAAAAGATGGCACTCAGTGACATGAACTCA
TGAGAGGGGATTAGAAGCAAGATTCGACTGGGTTTAAAGCCAGGCTCTAC
CACTTACTGTGAACTGCTTAACCTCAATGATAGAGCCTTACAGTAGCAAA
GCATGGGCCCAAGGACAGCACTCAGTGGCTAAGAGCATTTGCTACCAAGC
CTGAGGACTTGACACACAAACATCTTTGTGAGTTTGAAGCCAGCCTGGTT
TATACAGTGAGTTCCAAGACACCCAGGACTACACAGAAAGATCCAGTCTA
AAAAAAAAAAAAAAAGGAGTAATAAAATGATAAATAAGAAGGTGAGAATA
GTTCAGACCTATAGTTCAAACCCTAATACGCAAAAATGACATGACAGACT
TAATAAGGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no378_j03.b1 MSMg01no378_j03.b1 CHROMAT_FILE:
MSMg01no378_j03.b1 PHD_FILE: MSMg01no378_j03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:19:05 2005
         (574 letters)



>mm_chr9_20274240_20275213
          Length = 974

 Score = 1079 bits (558), Expect = 0.0
 Identities = 567/570 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttcatgtctgcgaagtgaacgaggatgactgtaggcttttccacactgctgac 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttcatgtctgcgaagtgaacgaggatgactgtaggcttttccacactgctgac 264

                                                                       
Query: 65  acttatagggtttctcttcagtgtgggtgtgacttatttcatgaatcctgaaggaactgg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 acttatagggtttctcttcagtgtgggtgtgacttatttcatgaatcctgaaggaactgg 324

                                                                       
Query: 125 gacagatgaaggctttcccacactccttacattcatagggcttctctccagtgtgggttc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gacagatgaaggctttcccacactccttacattcatagggcttctctccagtgtgggttc 384

                                                                       
Query: 185 tttcatggatctgaaatgaagtggagtgactgaaggctttcccacactgtttacactcat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tttcatggatctgaaatgaagtggagtgactgaaggctttcccacactgtttacactcat 444

                                                                       
Query: 245 agggtttttctccagtgtggattcgcatgtgaattttaaggtgggtggaatagttaaagg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agggtttttctccagtgtggattcgcatgtgaattttaaggtgggtggaatagttaaagg 504

                                                                       
Query: 305 ccttcccacactccttgcacgtgtatgattttttagcattgtgagttctcatgtggttat 364
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ccttcccacattccttgcacgtgtatgattttttagcattgtgagttctcatgtggttat 564

                                                                       
Query: 365 taagacatgaaagatatccaaatgctttcccacaaatcttgcactcacaggtcttctctt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 taagacatgaaagatatccaaatgctttcccacaaatcttgcactcacaggtcttctctt 624

                                                                       
Query: 425 cagcatgcaacttcagatgcccattaaggttggaagaaatagcaaaggctttcccacatt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 cagcatgcaacttcagatgcccattaaggttggaagaaatagcaaaggctttcccacatt 684

                                                                       
Query: 485 tcacacacacaaaaggcttctctcctgtgtgagttcttatatgttggatcagtcgagagg 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tcacacacacaaaaggcttctctcctgtgtgagttcttatatgttggatcagtcgagagg 744

                                         
Query: 545 atgtaaggaaggctttcccgcactccttac 574
           | ||||| ||||||||||||||||||||||
Sbjct: 745 acgtaagaaaggctttcccgcactccttac 774



 Score = 89.7 bits (46), Expect = 6e-22
 Identities = 52/54 (96%)
 Strand = Plus / Plus

                                                                 
Query: 131 tgaaggctttcccacactccttacattcatagggcttctctccagtgtgggttc 184
           ||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct: 919 tgaaggctttcccacactccttacattcatagggcttttcgccagtgtgggttc 972


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 54
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 574
Length of database: 974
Length adjustment: 10
Effective length of query: 564
Effective length of database: 964
Effective search space:   543696
Effective search space used:   543696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no378_j03.g1 MSMg01no378_j03.g1 CHROMAT_FILE:
MSMg01no378_j03.g1 PHD_FILE: MSMg01no378_j03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:19:05 2005
         (568 letters)



>mm_chr9_20454623_20455590
          Length = 968

 Score = 1052 bits (544), Expect = 0.0
 Identities = 560/566 (98%), Gaps = 2/566 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggacagccagagttacacagagaaaccctagctccagaa--tttttttttaaagttac 58
           |||||||||||||||||||||||||||||||| ||||||||  |||||||||||||||||
Sbjct: 749 caggacagccagagttacacagagaaaccctatctccagaatttttttttttaaagttac 690

                                                                       
Query: 59  tttacaaaagattacatttataagggatactgccaagaaaactgtagtcaagagcacaat 118
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 tttacaaaagattacatttataagggatactgccaagaaaactgtagtcaagagcacaat 630

                                                                       
Query: 119 ttgtggcaatctgatctctcctttcaccatgggattctggaggtcaaactaaagttgtca 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 ttgtggcaatctgatctctcctttcaccatgggattctggaggtcaaactaaagttgtca 570

                                                                       
Query: 179 ggcttcgtggcaagttaccagtcttgctggccctagataattaatgattttcaaagacac 238
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 ggcttcgtggcaagttacccgtcttgctggccctagataattaatgattttcaaagacac 510

                                                                       
Query: 239 tgatgggggaggggttcaatgagttcaccaatagtgtaaacctctgtgtgacttaaaaaa 298
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 509 tgatgggggaggggttcaatgagttcaccaatagtgaaaacctctgtgtgacttaaaaaa 450

                                                                       
Query: 299 gatggcactcagtgacatgaactcatgagaggggattagaagcaagattcgactgggttt 358
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 449 gatggcactcagtgacatgaactcatgagaagggattagaagcaagattcgactgggttt 390

                                                                       
Query: 359 aaagccaggctctaccacttactgtgaactgcttaacctcaatgatagagccttacagta 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 aaagccaggctctaccacttactgtgaactgcttaacctcaatgatagagccttacagta 330

                                                                       
Query: 419 gcaaagcatgggcccaaggacagcactcagtggctaagagcatttgctaccaagcctgag 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 gcaaagcatgggcccaaggacagcactcagtggctaagagcatttgctaccaagcctgag 270

                                                                       
Query: 479 gacttgacacacaaacatctttgtgagtttgaagccagcctggtttatacagtgagttcc 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 gacttgacacacaaacatctttgtgagtttgaagccagcctggtttatacagtgagttcc 210

                                     
Query: 539 aagacacccaggactacacagaaaga 564
           ||||||||||||||||||||||||||
Sbjct: 209 aagacacccaggactacacagaaaga 184


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 968
Length adjustment: 10
Effective length of query: 558
Effective length of database: 958
Effective search space:   534564
Effective search space used:   534564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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