Query= MSMg01no378_j16.b1 MSMg01no378_j16.b1 CHROMAT_FILE:
MSMg01no378_j16.b1 PHD_FILE: MSMg01no378_j16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:19:08 2005
(496 letters)
>mm_chr9_112918580_112919475
Length = 896
Score = 845 bits (437), Expect = 0.0
Identities = 476/491 (96%), Gaps = 5/491 (1%)
Strand = Plus / Plus
Query: 5 gaattcctataatttactaagttattttgaaaagttgtcaaagtgcctaaagaatgttag 64
|||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctataaatcagtaagttattttgaaaagttgtcaaagtgcctaaagaatgttag 264
Query: 65 aagagatgtacaagagagaaatgaaaattaatgaggtttttcttaactccatagaataac 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aagagatgtacaagagagaaatgaaaattaatgaggtttttcttaactccatagaataac 324
Query: 125 aataataacaaaatccaaggggaaataaccttcagagctggtaggttggggcaggcagct 184
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aataataacaagatccaaggggaaataaccttcagagctggtaggttggggcaggcagct 384
Query: 185 tgagtttctagctctccatagaaatatggaaattgatcagaaaccatcaacactaaatgt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgagtttctagctctccatagaaatatggaaattgatcagaaaccatcaacactaaatgt 444
Query: 245 attataactttagaaagcagccaagggttacaatattt--ccattaagtgctaaataaag 302
|||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct: 445 attataactttagaaagcagccaagggttagaata---gcccattaagtgctaaataaag 501
Query: 303 taaaaggccgatttaaaatgttaggaaagttttgtgacattttcctcccctcgctccacc 362
||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 502 taaaaggccaatttaaaatgttaggaaaattttgtgacattttcctcccctcgctccacc 561
Query: 363 tgcttcctagctcagcaactcactctcttgtgtagacccttgggccatgcttcctgagac 422
||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 562 tgcttcctagctcagaaactcactctctagtgtagacccttgggccatgcttcctgagac 621
Query: 423 agcaaatcagccttcattcttcagtgcttgactatgtgtgttagaagttgcctaggagat 482
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 622 agcaaatcagccttcattcttcagtgcttgactacgtgtgttagaagttgcctaggagat 681
Query: 483 aagctaattgg 493
|||||||||||
Sbjct: 682 aagctaattgg 692
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 896
Length adjustment: 10
Effective length of query: 486
Effective length of database: 886
Effective search space: 430596
Effective search space used: 430596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no378_j16.g1 MSMg01no378_j16.g1 CHROMAT_FILE:
MSMg01no378_j16.g1 PHD_FILE: MSMg01no378_j16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:19:08 2005
(454 letters)
>mm_chr9_113097541_113098394
Length = 854
Score = 816 bits (422), Expect = 0.0
Identities = 446/454 (98%)
Strand = Plus / Minus
Query: 1 atattaaacttaagactttagttcaggaacatgtcgcagatggacacttataagtataat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 atattaaacttaagactttagttcaggaacatgtcgcagatggacacttataagtataat 595
Query: 61 ttcaagatacttaatttatctgccctgacattcttcctgtgctgacaaaccaaaactccc 120
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 594 ttcaagatacttaatttatctgccctgacattcttcctgtgctgacaacccaaaactccc 535
Query: 121 aagtagcctgcctttcctggagacacggggctctgaatgccaaaactaggaggggacaag 180
||||||||||||||||||||||||||||||||| |||||||||| ||||||| |||||||
Sbjct: 534 aagtagcctgcctttcctggagacacggggctcagaatgccaaagctaggagaggacaag 475
Query: 181 ataaaatctttacaaaacctaggaagaagagacagctccatctgctcaggtcttaagatg 240
||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 474 ataaaatttttacaaaacctaggaagaagagacagttccatctgctcaggtcttaagatg 415
Query: 241 catatgtagtctgcagtcccagtagagaagcctggtgctacacattcctccaaacgagaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 catatgtagtctgcagtcccagtagagaagcctggtgctacacattcctccaaacgagaa 355
Query: 301 tcttctagcagctgacctgtcatcatgtcaccctgctctgtgtggtttccattggttggt 360
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 354 tcttctagcagctgacctgtcatcatgtcgccctgctctgtgtggtttccattggttggt 295
Query: 361 tagattaacctgttgcacaagtgacaggaaacccactgccgactgactgtcaggacaaga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 294 tagattaacctgttgcacaagtgacaggaaacccactgccgactgactgtcagcacaaga 235
Query: 421 catcttgaatagcttctaaggagacatttcctta 454
||||||||||||||||||||||||||||||||||
Sbjct: 234 catcttgaatagcttctaaggagacatttcctta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 454
Length of database: 854
Length adjustment: 10
Effective length of query: 444
Effective length of database: 844
Effective search space: 374736
Effective search space used: 374736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
