Query= MSMg01no379_d11.b1 MSMg01no379_d11.b1 CHROMAT_FILE:
MSMg01no379_d11.b1 PHD_FILE: MSMg01no379_d11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:19:55 2005
(612 letters)
>mm_chr9_76941786_76942797
Length = 1012
Score = 932 bits (482), Expect = 0.0
Identities = 582/616 (94%), Gaps = 7/616 (1%)
Strand = Plus / Plus
Query: 2 gtaatctcaag-cccagtatagaataaaaggtacaaatagagtcctgtaaaccatcatgt 60
||||||||||| |||| ||||||||||||| ||||||||||||||| |||||||||||||
Sbjct: 202 gtaatctcaagcccca-tatagaataaaagctacaaatagagtcctataaaccatcatgt 260
Query: 61 atcatgggctaattatactagagaggaaaaaggcttggaataaatttacaatctaggaat 120
||| |||||||||| ||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct: 261 atcttgggctaattgcactagagagaaaaaaggcttggaataaatttacaacctaggaat 320
Query: 121 acattccttttaggttaggaatgaggccactatctggtaactaaatgttata-agctggg 179
|||||| ||||||||||||||||||||||||||||||||||||||| ||||| | |||||
Sbjct: 321 acattctttttaggttaggaatgaggccactatctggtaactaaatcttataca-ctggg 379
Query: 180 aatggacaatttattgtaggtacaataacagaaaataaatgatggagtagtttatctgta 239
||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 380 aatgggcaatttattgtaggtacaagaacagaaaataaatgatggagtagtttatctgta 439
Query: 240 caaagttaaaaatattaagacacaaggcagctgatttgtctcttgacaaatctgttgtaa 299
|||||||||||||| |||||||||||||||| |||| ||||||||||||||||||||||
Sbjct: 440 caaagttaaaaataaaaagacacaaggcagcttatttttctcttgacaaatctgttgtaa 499
Query: 300 cttgtgacataaaaact--tgtcttatacccagaagatgttcctacatgtaataaggaca 357
||||||||||||||||| ||| |||||||||||||||| ||| ||||||||||||||||
Sbjct: 500 cttgtgacataaaaactattgttttatacccagaagatggtccaacatgtaataaggaca 559
Query: 358 catgctccactatgttcatagaagccttatttataatatccagaagctggaaagaaccca 417
|||||||||| |||||||||| |||||||||||||||| |||||||||| ||||||||||
Sbjct: 560 catgctccacaatgttcatagcagccttatttataatagccagaagctgaaaagaaccca 619
Query: 418 gatgtccctcaacagaggaatggatacagaaaatgtggtacatttacacaatggagtatt 477
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 620 gatgtccctcaacagaggaatggatacagaaaatgtggtacatttacacaatggagtact 679
Query: 478 acacagctattaaaaacaatgaattcatgaaattcttagacaaatggatggaactagaaa 537
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 680 acacagctattaaaaacaatgaattcatgaaattcttaggcaaatggatggaactagaaa 739
Query: 538 atatcatcctgagtgtgataacccaaccacaaaagaacatacatggtat-atactcattg 596
||||||||||||||||||||||| || |||||||||||| ||||||||| ||||||||||
Sbjct: 740 atatcatcctgagtgtgataacctaatcacaaaagaacacacatggtattatactcattg 799
Query: 597 ataaatggatattagc 612
||||||||||||||||
Sbjct: 800 ataaatggatattagc 815
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1012
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1002
Effective search space: 603204
Effective search space used: 603204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no379_d11.g1 MSMg01no379_d11.g1 CHROMAT_FILE:
MSMg01no379_d11.g1 PHD_FILE: MSMg01no379_d11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:19:55 2005
(485 letters)
>mm_chr12_82392552_82393436
Length = 885
Score = 915 bits (473), Expect = 0.0
Identities = 482/485 (99%)
Strand = Plus / Plus
Query: 1 tcagaccctacagagtggtactcgttcctggttctggtcctcagaactgatagagtgata 60
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 201 tcagaccctacagagtggtactcgtccctggttctggtcctcagaactgatagagtgata 260
Query: 61 catgactgcaactccagcactagcgtgtgaggtgggcagggcaaggagacagaccagcaa 120
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 261 catgactgcaactccagcactagcgtgtgaggtgggcagggcaagaagacagaccagcaa 320
Query: 121 cacaaatcgggaggagagatagccattgtcttcttctcacatcatgcatgcatatacacc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cacaaatcgggaggagagatagccattgtcttcttctcacatcatgcatgcatatacacc 380
Query: 181 tgcacacacaaaaacacccctataccaataaatacatcacgcacaacacaccaaaaaggg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgcacacacaaaaacacccctataccaataaatacatcacgcacaacacaccaaaaaggg 440
Query: 241 aaaggtctcttaaaagagtcatgtattaaaacttaattaccaatgatggctttgtgaatg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaaggtctcttaaaagagtcatgtattaaaacttaattaccaatgatggctttgtgaatg 500
Query: 301 agtggatttagggtatgtcagaaagtgtggagggcaggccctaattaggggaagtgggtg 360
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 501 agtggatttagggtatgtcagaaaatgtggagggcaggccctaattaggggaagtgggtg 560
Query: 361 gtcactgggggagaggtctttgaaggctctatcttatccctaactccttcattctgtttt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtcactgggggagaggtctttgaaggctctatcttatccctaactccttcattctgtttt 620
Query: 421 actttctctgctttctgcccactgggaggagagcagtgataagccaccatatgctcctga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 actttctctgctttctgcccactgggaggagagcagtgataagccaccatatgctcctga 680
Query: 481 catgc 485
|||||
Sbjct: 681 catgc 685
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 885
Length adjustment: 10
Effective length of query: 475
Effective length of database: 875
Effective search space: 415625
Effective search space used: 415625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
