BAC Information

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BAC

Clone NameMSMg01-379H06
Chromosome9 (Build37)
Map Location 73,531,957 - 73,698,584
singlet/doubletdoublet
Overlap geneUnc13c
Upstream geneNedd4, EG639396, Prtg, LOC100040694, Pygo1, Dyx1c1, EG546143, Ccpg1, LOC100041896, Pigb, Rab27a, 2410004A20Rik, BC003885, EG436081
Downstream geneWdr72, Nr1h2-ps, LOC100040764
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-379H06.T7 (MSMg01no379_h06.b1)MSMg01-379H06.TJ (MSMg01no379_h06.g1)
ACCAG484062AG484063
length753829
length of high quality
(start - end)		480 (46 - 525)216 (75 - 290)
definitionCHROMAT_FILE: MSMg01no379_h06.b1 PHD_FILE: MSMg01no379_h06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:20:13 2005CHROMAT_FILE: MSMg01no379_h06.g1 PHD_FILE: MSMg01no379_h06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:20:14 2005
singlet/doubletdoubletdoublet
BLAST hitpluralunique
Map location.(73,698,147 - 73,698,584)(73,531,957 - 73,532,172)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACGAAATTTGCAGGCAAATGGATGTAACTAGAAAATATCATCCTG
AGTGAGGTAACCCAATCACAAAAAAACCACACAGGGCATATACTCACTGA
TAAGTGGATATTATCCCAGAAGCTCGGAATAGCAAAGATACAATTCACCA
CATGAAGCTCAATAAGACAGAAGACCAAAGTATGGCTACTCTGGTCTTCT
TAGAAGGGAGAACAAAATACCCATGGGAGGAGATATATAATTTTCTATGA
CTATGAATAAAATTATTTTTTAATTCATATGTCATGATTTTACAGTGTTA
ATTCTTCTCTGTGAGTAATGTGTGGCTTCCATTTGTGTGTGTGTCCTATA
TAACTCCTTTAGCCAATATTTTGTGATTTTTTTCATGAGAGTAATGTTTT
TATGTTTCTTCTATTTATTTTTAAATATTTTCTCTCCACAGACTCCATGC
TGTANGAGGTGACTTTCTTAATTTGTTTTTGTTTTTTTTGGNTTTTTTTT
TTGGCTAGTTTTTAATAGCTGTGTTCTTCGTTCTTTTTCTTGGATTTGCN
GCCCATAATTTTAGGGAAATCACGTCACCACTCCTACAGATTTCTTGTTT
AAAAAAAAATTTAGGGTTGGACACTCTTTAGCCTTCAAATTTATTGTGAT
TAATTCCCGGGATTTTCAAAGGGGAACACCTTTCTTTGGCTTTTTTTCCT
CCC

AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCACAAAGTAGATGCAAGTTAAAAAG
TCATCTCCCAGAAACTATAATTCTTCTACACAAAAAAGAAGCAACATCAT
CAGATAGGTATTTTTAAGAGATTATTTTGGGTGTAAGATTTTAGGAGGAT
GTGTTGGAGAAAGGAGAATAAAGAAAAGGAGNCCAATAGGAAGAAGCTAT
CTGAAGTTCTTTTCCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTT
ATTGGTTGTGGGTGGTATTTAGATGGTTGCTGTATTGTTTCTCCGCCCCT
TCCCCCCTGTTTCCCTTATGTCCGACGTGTTGCGGTCTATCACGACCCCT
TTGACAATAATATCTCTTTCCGCTCCACGAATACCATCAGTACCCCTATT
CCCCCTTCTCACTCCACTCGCCTGTCCCCCTCTTCAGTTGTGCTCACTAT
CACTTTTCTTCCTACTCTCCTTATCCACTTCTCCTCCCCTGCCGGCCCCG
TTCTACCCTTCCTTGCATCATCGACAACATTTGTCCTATCCCGGACTCGG
ATATGCAATTCGTCATTCGTCTCTCCATCTGCCCACGGCGGTACTGCCGA
AATTACGTTCTGCCGACTGCTTGGTTTCTCCTCTGTCCTGTTTCTCCTCC
CTGCGCCAGTTCGTCCGGTTATTTCACACCGCTCTCCGCCCGCCCGTGTT
ATTTCTTGATGTGTGATTTCTTTCGCTTGTTTATCATTTGGTTCCCCCGT
TTCCCCCGTGTGACCGTATCCATCCCGCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no379_h06.b1 MSMg01no379_h06.b1 CHROMAT_FILE:
MSMg01no379_h06.b1 PHD_FILE: MSMg01no379_h06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:20:13 2005
         (480 letters)



>mm_chr9_73697705_73698584
          Length = 880

 Score =  826 bits (427), Expect = 0.0
 Identities = 435/438 (99%)
 Strand = Plus / Minus

                                                                       
Query: 43  aaatatcatcctgagtgaggtaacccaatcacaaaaaaaccacacagggcatatactcac 102
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 880 aaatatcatcctgagtgaggtaacccaagcacaaaaaaaccacacagggcatatactcac 821

                                                                       
Query: 103 tgataagtggatattatcccagaagctcggaatagcaaagatacaattcaccacatgaag 162
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 820 tgataagtggatattatcccagaagctcggaagagcaaagatacaattcaccacatgaag 761

                                                                       
Query: 163 ctcaataagacagaagaccaaagtatggctactctggtcttcttagaagggagaacaaaa 222
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 760 ctcaataagacagaagaccaaagtatggctactctggtcttcttagaagggagaacaaaa 701

                                                                       
Query: 223 tacccatgggaggagatatataattttctatgactatgaataaaattattttttaattca 282
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 tacccatgggaggagatatataattttctatgactatgaataaaattattttttaattca 641

                                                                       
Query: 283 tatgtcatgattttacagtgttaattcttctctgtgagtaatgtgtggcttccatttgtg 342
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 tatgtcatgattttacagtgttaattcttctctgtgagtaatgtgtggcttccatttgtg 581

                                                                       
Query: 343 tgtgtgtcctatataactcctttagccaatattttgtgatttttttcatgagagtaatgt 402
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 tgtgtgtcctatataactcctttagccaatattttgtgatttttttcatgagagtaatgt 521

                                                                       
Query: 403 ttttatgtttcttctatttatttttaaatattttctctccacagactccatgctgtanga 462
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 520 ttttatgtttcttctatttatttttaaatattttctctccacagactccatgctgtagga 461

                             
Query: 463 ggtgactttcttaatttg 480
           ||||||||||||||||||
Sbjct: 460 ggtgactttcttaatttg 443


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 880
Length adjustment: 10
Effective length of query: 470
Effective length of database: 870
Effective search space:   408900
Effective search space used:   408900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no379_h06.g1 MSMg01no379_h06.g1 CHROMAT_FILE:
MSMg01no379_h06.g1 PHD_FILE: MSMg01no379_h06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:20:14 2005
         (216 letters)



>mm_chr9_73531757_73532372
          Length = 616

 Score =  389 bits (201), Expect = e-113
 Identities = 212/216 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcacaaagtagatgcaagttaaaaagtcatctcccagaaactataattcttctacacaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 tcacaaagtagatgcaagttaaaaagtcatctcccagaaactataattcctctacacaaa 260

                                                                       
Query: 61  aaagaagcaacatcatcagataggtatttttaagagattattttgggtgtaagattttag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaagaagcaacatcatcagataggtatttttaagagattattttgggtgtaagattttag 320

                                                                       
Query: 121 gaggatgtgttggagaaaggagaataaagaaaaggagnccaataggaagaagctatctga 180
           |||||||||||||||||||||||||  |||||||||| ||||||||||||||||||||||
Sbjct: 321 gaggatgtgttggagaaaggagaatggagaaaaggagtccaataggaagaagctatctga 380

                                               
Query: 181 agttcttttccgtgtgtgtgtgtgtgtgtgtgtgtg 216
           ||||||||||||||||||||||||||||||||||||
Sbjct: 381 agttcttttccgtgtgtgtgtgtgtgtgtgtgtgtg 416


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 216
Length of database: 616
Length adjustment: 9
Effective length of query: 207
Effective length of database: 607
Effective search space:   125649
Effective search space used:   125649
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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