Query= MSMg01no379_k03.b1 MSMg01no379_k03.b1 CHROMAT_FILE:
MSMg01no379_k03.b1 PHD_FILE: MSMg01no379_k03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:20:27 2005
(170 letters)
>mm_chr9_121979347_121979915
Length = 569
Score = 273 bits (141), Expect = 5e-78
Identities = 159/165 (96%), Gaps = 3/165 (1%)
Strand = Plus / Minus
Query: 7 attcagaggtt-ttctcttctctttcccttggggattcccagagaatgggagatagcaat 65
||||||||||| || ||||||| ||||||||||||||||||| |||||||||| ||||||
Sbjct: 369 attcagaggttgtt-tcttctc-ttcccttggggattcccagtgaatgggagacagcaat 312
Query: 66 gaagcaactccagacaccacgctaaagtgactctggtgttgttgttcacgagcacttttg 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 gaagcaactccagacaccacgctaaagtgactctggtgttgttgttcacgagcacttttg 252
Query: 126 ttcttatttattttttatttgtgtgggtgggtggaagtgaggagt 170
|| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 tttttatttattttttatttgtgtgggtgggtggaagtgaggagt 207
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 170
Length of database: 569
Length adjustment: 8
Effective length of query: 162
Effective length of database: 561
Effective search space: 90882
Effective search space used: 90882
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no379_k03.g1 MSMg01no379_k03.g1 CHROMAT_FILE:
MSMg01no379_k03.g1 PHD_FILE: MSMg01no379_k03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:20:27 2005
(507 letters)
>mm_chr9_121815362_121816268
Length = 907
Score = 957 bits (495), Expect = 0.0
Identities = 504/507 (99%)
Strand = Plus / Plus
Query: 1 tgagaagagaggaaaaagcaaagcagcaggagagctggaggaaaggggagcagaggaacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgagaagagaggaaaaagcaaagcagcaggagagctggaggaaaggggagcagaggaacc 260
Query: 61 aacaaaccagcaatccgcagctaaccagctaagcccagctctctagctgggggcagagac 120
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 261 aacaaaccagcaatccgcagctaaccagttaagcccagctctctagctgggggcagagac 320
Query: 121 cagatcctgcaagcatcaggtaagcccagatgtgaccaagcccaagtgctgatagctacc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagatcctgcaagcatcaggtaagcccagatgtgaccaagcccaagtgctgatagctacc 380
Query: 181 ctacagacatcaagggtgagacgtccacactccttcctagctttaaatacggttcagggg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctacagacatcaagggtgagacgtccacactccttcctagctttaaatacggttcagggg 440
Query: 241 atctgctcaaaagatgacacccactttgcaaagcatgcaaagaaggaatccaggctgcag 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 441 atctgctcaaaagatgacacccactttgcaaagcatgcaaagaaggaatccaggttgcag 500
Query: 301 ctctgaaggctccatgatgagcaactgtaacgaggagccctggaaaccaatggacccggg 360
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 501 ctctgaaggctccatgatgagcaactgtaccgaggagccctggaaaccaatggacccggg 560
Query: 361 gcagccacaagtcaggtgcctatggacatccagttgcattgactggttggaagaaggctt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcagccacaagtcaggtgcctatggacatccagttgcattgactggttggaagaaggctt 620
Query: 421 gccagatgccatagtgttggggagaatggcacaaaggaggtacgcagttaggggcttggt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gccagatgccatagtgttggggagaatggcacaaaggaggtacgcagttaggggcttggt 680
Query: 481 ctatgacggggttacggggagccctcc 507
|||||||||||||||||||||||||||
Sbjct: 681 ctatgacggggttacggggagccctcc 707
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 907
Length adjustment: 10
Effective length of query: 497
Effective length of database: 897
Effective search space: 445809
Effective search space used: 445809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
