Query= MSMg01no379_o24.b1 MSMg01no379_o24.b1 CHROMAT_FILE:
MSMg01no379_o24.b1 PHD_FILE: MSMg01no379_o24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:20:50 2005
(492 letters)
>mm_chr9_62315712_62316601
Length = 890
Score = 665 bits (344), Expect = 0.0
Identities = 424/488 (86%), Gaps = 60/488 (12%)
Strand = Plus / Plus
Query: 5 gaattcaaacggattcc-gtcaggttcccttggccctgttcaaaggcttaatcccctctc 63
||||||||||||| || ||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 205 gaattcaaacggag-ccagtcaggttcccttggccctattcaaaggcttaatcccctctc 263
Query: 64 acatctctgtccttgtccctgatggatttctcttcctggccttatttcccttctcctggg 123
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 acatct--gtccttgtccctgatggatttctcttcctggccttatttcccttctcctggg 321
Query: 124 ccctgtgagtgccttactttattatctgcttctcctattcaaatgtaggctctgggaaag 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ccctgtgagtgccttactttattatctgcttctcctattcaaatgtaggctctgggaaag 381
Query: 184 ctgagctcttctttctttctttctttctttctttctttctttctttctttctttctttct 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ctgagctcttctttctttctttctttctttctttctttctttctttctttctttctttct 441
Query: 244 ttctttctttctttctttctttctttctttctttctttctttctttctttctttctttct 303
|||||||
Sbjct: 442 ttctttc----------------------------------------------------- 448
Query: 304 ttccctcctttatttctggtcactgcaggatcagtagcactttccatggtgccctgcaca 363
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 449 ---cctcctttatttctggtcactacaggatcagtagcactttccatggtgccctgcaca 505
Query: 364 tagtaggtgttcagggagcataatggagaaagctctgtcttctgggatatgccataccag 423
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 506 tagtaggtgttcagggagcataatggagaaagctctgacttctgggatatgccataccag 565
Query: 424 atggtattcacagagcatctaatatgtgttagggatatatatatatatatatatatatat 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 atggtattcacagagcatctaatatgtgttagggatatatatatatatatatatatatat 625
Query: 484 atatatat 491
||||||||
Sbjct: 626 atatatat 633
Score = 66.5 bits (34), Expect = 4e-15
Identities = 34/34 (100%)
Strand = Plus / Minus
Query: 458 atatatatatatatatatatatatatatatatat 491
||||||||||||||||||||||||||||||||||
Sbjct: 633 atatatatatatatatatatatatatatatatat 600
Score = 66.5 bits (34), Expect = 4e-15
Identities = 34/34 (100%)
Strand = Plus / Minus
Query: 458 atatatatatatatatatatatatatatatatat 491
||||||||||||||||||||||||||||||||||
Sbjct: 635 atatatatatatatatatatatatatatatatat 602
Score = 66.5 bits (34), Expect = 4e-15
Identities = 34/34 (100%)
Strand = Plus / Minus
Query: 458 atatatatatatatatatatatatatatatatat 491
||||||||||||||||||||||||||||||||||
Sbjct: 637 atatatatatatatatatatatatatatatatat 604
Score = 66.5 bits (34), Expect = 4e-15
Identities = 34/34 (100%)
Strand = Plus / Minus
Query: 458 atatatatatatatatatatatatatatatatat 491
||||||||||||||||||||||||||||||||||
Sbjct: 639 atatatatatatatatatatatatatatatatat 606
Score = 66.5 bits (34), Expect = 4e-15
Identities = 34/34 (100%)
Strand = Plus / Minus
Query: 458 atatatatatatatatatatatatatatatatat 491
||||||||||||||||||||||||||||||||||
Sbjct: 641 atatatatatatatatatatatatatatatatat 608
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 123
Number of extensions: 51
Number of successful extensions: 51
Number of sequences better than 10.0: 1
Number of HSP's gapped: 40
Number of HSP's successfully gapped: 8
Length of query: 492
Length of database: 890
Length adjustment: 10
Effective length of query: 482
Effective length of database: 880
Effective search space: 424160
Effective search space used: 424160
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no379_o24.g1 MSMg01no379_o24.g1 CHROMAT_FILE:
MSMg01no379_o24.g1 PHD_FILE: MSMg01no379_o24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:20:50 2005
(455 letters)
>mm_chr9_62546645_62547499
Length = 855
Score = 772 bits (399), Expect = 0.0
Identities = 411/415 (99%)
Strand = Plus / Minus
Query: 41 catcactcaggctaccctcaaacttgctgtgtagccgaggacgcccttgagtgcatgatc 100
|||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 855 catcactcagactaccctcaaacttgctgtgtagccgaggatgcccttgagtgcatgatc 796
Query: 101 ttcctgcctctgcaccacaaatgctggtattacagtgtgcaccaccactcctggtttctg 160
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 795 ttcctgcctctgcaccacaaatgctgggattacagtgtgcaccaccactcctggtttctg 736
Query: 161 tggtgctggggactgaacccagccagggctttgtgtacggtaggcaagcgctgtatcaac 220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 tggtgctggggactgaacccagccagggctttgtgtacggtaggcaagcgctgtatcaac 676
Query: 221 cgagttacattcccagtcccagaccgaagctgcttttttactgatacaagtttagataaa 280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 cgagttacattcccagtcccagaccgaagctgcttttttactgatacaagtttagataaa 616
Query: 281 gagataaatggaacacacagaaggacataagatccctggagacttcatgaaagacaatgt 340
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 gagataaacggaacacacagaaggacataagatccctggagacttcatgaaagacaatgt 556
Query: 341 caggatgcccaccaactttatgaactggtgggaatgactttaattaaaatgataatacca 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 caggatgcccaccaactttatgaactggtgggaatgactttaattaaaatgataatacca 496
Query: 401 tgtgtgagtgtggccatgggatgactgggactctcttattttactagagagttta 455
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 tgtgtgagtgtggccatgggatgactgggactctcttattttactagagagttta 441
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 455
Length of database: 855
Length adjustment: 10
Effective length of query: 445
Effective length of database: 845
Effective search space: 376025
Effective search space used: 376025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
