BAC Information

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BAC

Clone NameMSMg01-380A05
Chromosome9 (Build37)
Map Location 77,868,272 - 77,868,745
singlet/doubletsinglet
Overlap genenone
Upstream geneTinag, LOC436082, 2310046A06Rik, 5730403I07Rik, Lrrc1, Klhl31, Gclc, LOC100042212, Elovl5
Downstream geneGcm1, LOC666353, Fbxo9, Ick, C920006O11Rik, Gsta4, LOC100041074, Gsta1, LOC666367, LOC100042295, LOC666373, LOC100042314, Omt2a, EG666383, Omt2b, Gsta2, Dppa5, 2410146L05Rik, LOC666408, LOC100042356, LOC666419, E330016A19Rik, Mto1, Eef1a1, Slc17a5, Cd109, LOC384957, EG666456
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-380A05.T7 (MSMg01no380_a05.b1)MSMg01-380A05.TJ (MSMg01no380_a05.g1)
ACCAG484489AG484490
length782744
length of high quality
(start - end)
240 (67 - 306)475 (64 - 538)
definitionCHROMAT_FILE: MSMg01no380_a05.b1 PHD_FILE: MSMg01no380_a05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:20:57 2005CHROMAT_FILE: MSMg01no380_a05.g1 PHD_FILE: MSMg01no380_a05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:20:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCCGCTATACCACTCACTATATCGCACAAGACCGCGGAATTCCTAGAATT
TTCCTAAAAAATGAAAATAAGCTATTTCAGAGCCCTCCTATGGACAGACG
GAAAACAGGAGATGTCCTGCTTCCTCTCTGGCTCCTATGGAGATATTTTT
AGCTTCGGATAGGATATCTGTGTTCTATTGTCTGTTTTTGGTGCACCAAA
TTATCTATATGTCTGCCAACTCGTGTTTGTTTTTGTTTGGATGATTGAAT
GATTGTTGTTCTGTGTTTCATGTTGAAAAATATAAAAAGCAGTCTCAGTC
TGCACAGCTTTTTTTTGACAAGTTAGCTGCACGGTGGCTGGGAGTCAAGT
ACAGCTGACAAAGCTCTGCTGAGGGCCGATTGCAAATAAAGCTTTTAAAG
GGGCAGGCAGCCTTTTGCTTGTAACAGAAAGTTAGCTTAAAATTGGAAAC
TCAAGGTTGGAGTTATTCTAAACAACATAAGATAACAGGTGACATGCATA
AAGCAGTGTACTAAGGGTAGAAAGAGTATATTTGAAAATAAAGTACATAT
TTTTACCAATAGAAGGCATAACCTTTTCTAGGTATTATTGGATACTGGAG
CCAGATATAAGCATCATATCCTAGTAAGTGTTGGCCCTGCTTTTTTGTGC
TTGTTTAATCATTCGTTTCCTAACCTTACCATGAATTATGATATTGACGG
CTTTTCCTACCTATTTACCTGCCCTATGTTTTTTCCCCCGCGAAATAATC
TTCGCAACCCCCCGATTTCCCCCCTCTTCTCC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXTTCCCGAATTCTCTGGAACTGAAGTTTTAAACAGTTGTGAGCCACC
ATGTGACTTCTGGGAATCAAATCTGGGTCTTCTTGCAAGAGCAGTCAGTG
CTTTTAAATGCTGAACTATCTCTCCAACCTGGTATAGAACACTTTAAATA
AGGTTTCTTTCCAGTGGCTGGAACAGCAGAGGAGCTATGAGCTCCCAGAG
AAGGAAACATTAAGACACAGAAGTATTTTAAGCTTGTTTTTCAAGCCTGC
ACAAGAGCTACATTTGTTTTAAGAGACTGAGACACCATTGAGGGAATCTA
GCTGTTGAAGCTGAAGTGTCCTTTCTCTGGGCCTGTCAGAGAGAAGGCCT
GGCCTGCAGGAGCTGTCACTGTCAACCTGCCCAAAAGATTAAATATTTAG
GGCACTTTGGAGAGAGAAGTTGCCTATGCTTTGAAAAGATAAGTCTAAAT
CTAGCACCTTAGATCACCCCTACATGCTACCTTCCATGAGAGCCCATCTT
GATGCCCATGACCTGTGCTGCCACCAAGGGCCATGATCAAGTTCAGAGAG
CTATGTGGATGCCCATGGTCTGTGTTCCTGTACGAGGCCATCTCGATGCC
TGTAGCCCATGTTATCAATCAAAAGCAAGTGGATGCCCTTTGGCTGTTCA
ACCGCCAGGGGCCATGTTGGTGTTTATGGCCCGTGTCTCATTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no380_a05.g1 MSMg01no380_a05.g1 CHROMAT_FILE:
MSMg01no380_a05.g1 PHD_FILE: MSMg01no380_a05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:20:57 2005
         (475 letters)



>mm_chr9_77867952_77868825
          Length = 874

 Score =  835 bits (432), Expect = 0.0
 Identities = 464/478 (97%), Gaps = 7/478 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctctggaactgaagttttaaacagttgtgagccaccatgtgacttctgggaatcaaatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 tctctggaactgaagttttaaacagttgtgagccaccatgtgacttctgggaatcaaatc 735

                                                                       
Query: 61  tgggtcttcttgcaagagcagtcagtgcttttaaatgctgaactatctctccaacctggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 734 tgggtcttcttgcaagagcagtcagtgcttttaaatgctgaactatctctccaacctggc 675

                                                                       
Query: 121 atagaacactttaaataaggtttctttccagtggctggaacagcagaggagctatgagct 180
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 674 atagaacactttaaataaggtttctttcctgtggctggaacagcagaggagctatgagct 615

                                                                       
Query: 181 cccagagaaggaaacattaagacacagaagtattttaagcttgtttttcaagcctgcaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 cccagagaaggaaacattaagacacagaagtattttaagcttgtttttcaagcctgcaca 555

                                                                       
Query: 241 agagctacatttgtttt---aagagactgagacaccattgagggaatctagctgttgaag 297
           |||||||| ||||       | ||||||||||||||||||||||||||||||||||||||
Sbjct: 554 agagctacgtttg----gggaggagactgagacaccattgagggaatctagctgttgaag 499

                                                                       
Query: 298 ctgaagtgtcctttctctgggcctgtcagagagaaggcctggcctgcaggagctgtcact 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 498 ctgaagtgtcctttctctgggcctgtcagagagaaggcctggcctgcaggagctgccact 439

                                                                       
Query: 358 gtcaacctgcccaaaagattaaatatttagggcactttggagagagaagttgcctatgct 417
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 gtcaacctacccaaaagattaaatatttagggcactttggagagagaagttgcctatgct 379

                                                                     
Query: 418 ttgaaaagataagtctaaatctagcaccttagatcacccctacatgctaccttccatg 475
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 378 ttgaaaagataagtctaaatctagcaccttagaccacccctacatgctaccttccatg 321


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 475
Length of database: 874
Length adjustment: 10
Effective length of query: 465
Effective length of database: 864
Effective search space:   401760
Effective search space used:   401760
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)