BAC Information

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BAC

Clone NameMSMg01-380D07
Chromosome9 (Build37)
Map Location 119,139,967 - 119,330,154
singlet/doubletdoublet
Overlap gene9330176C04Rik, Oxsr1, Myd88, Acaa1a, Xylb, Acvr2b
Upstream geneEomes, Golga4, Itga9, LOC100039768, Ctdspl, Vill, Plcd1, Dlec1, Acaa1b, EG546165, Slc22a14, Slc22a13
Downstream geneEndogl1, Scn5a, Scn10a, Scn11a, LOC100039837, Wdr48, Gorasp1, Ttc21a, Axud1, Cmya1, Cx3cr1, Ccr8, Slc25a38, Rpsa, Snora62, EG546166, Mobp, LOC100039898, Myrip, LOC666044
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-380D07.T7 (MSMg01no380_d07.b1)MSMg01-380D07.TJ (MSMg01no380_d07.g1)
ACCAG484637AG484638
length764768
length of high quality
(start - end)
244 (64 - 307)531 (65 - 595)
definitionCHROMAT_FILE: MSMg01no380_d07.b1 PHD_FILE: MSMg01no380_d07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:21:12 2005CHROMAT_FILE: MSMg01no380_d07.g1 PHD_FILE: MSMg01no380_d07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:21:12 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(119,329,911 - 119,330,154)(119,139,967 - 119,140,497)
sequence
ATGTCACTAAACGACNCACTATTTCCAGAAGATCCGCGGAATTCCATTAT
TTTCCCGCTCTGTCAGCCCCAGGCTGCACGCCCTCACGAACGGTAAGACA
GCAAGGGAGCCCGAGGACAGGAGGGCCCTAACCTCAATTTCACATCTACT
GGATCCACCCGAGTCTCTAAATTACAGGAATGGGCAAGGCTGCAGGGATG
AGCAATTCTTACTCCCTGTGTGTGCAGGAGCCATGGAGGCTGTCAGAGTA
GGCATCAGATCCCCTGGGCTGGAGGTACAGGAGTTTGAGAGCCACCAGAT
GTGGGTGCCGTTTAACAGAGCTTGGGTCCTCTGGTGTCCGCACTCTTCCC
TCCCATCCCTGCACACGCAGCTCCCTGGCTACGCTGGGAGGGGGGCTCAC
TATACTTTTCCTAGCATTTTATGGGGGCTTTTCAGCTCTTCCACTACAAA
TGCTTCAGACAGTCCAAGAATACTTTCCAAAATGACAGGAGGAAGCCTAG
ACATCTCCCATCACCTCTATACCAGACTTCATAAACAAGTCCCACAGCAC
AGGGTGAGGTCTAGGGCCCTCGGCCGGCCCTGTGATTCCCACATATTATC
AGAGAGCGTCCTTCCATGTGAGGCCCAGGTTTATACCCCTGTTTTGTTTT
TTTTGCTGAGGCTATTTTTCTAAAGCACTAACTCTCTTTGGTTTTCTATT
ACCCTCCCTATTCCCTTACCCTTATTCCGCCTTCTTACTCGCCATGTTGA
CCTGCTTAACTGTT
GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTGACTGACAGGATGTCAACTGCTAGCCAGAGGCAGG
CACAGAGGCACACCTGGGAAGAAGTTGTACCCACTCTGGGCAAGCAGTAA
GGCAGGTAAAGAGACATAGAAGGAGACAGGAAGTAGGACAGAAAGGGAGG
GAATCAGGCATATCAGGGGAAGAGGGAGAAGAACAGATGCAGGCAGCTGG
GCAGATAAGGGACACGCTGAGAGATACAAACAAGAGACCATCCAAAGACA
ACAGCCACTCGGGCAGCAGAGCACTCAGAGAAAGTTACAGTGGCATTCAG
AGCCCAAGGTTGGGCACAGGTTGGCCTATGATGCCCAATGGGGGAGTGGA
CCAGGATGACTGGCAAAGGAGAAAACAGACATAAAAACAAGATACAGAGC
AGCAAGTATCAGAGGCACAGGGTCAGACAGAGTACCTGACACACCACACA
AGTGGGCACACAGACAGCAGAACATCCTACCTCATTCTTTAGGGACTGAG
GCCGGTTCTCAGGATAGTCCCAGCCTGAGTCACAGGCCTGTGTCTCATTG
AAGCGGTGGCTCAGGACGTCTTCCAGGCTGGCACTGTCAGGAGGTGGCCG
GAACATGAGGTCAGACTCTGGTCTGCCCCGCTGTGTCGCCTGGGGAGCTT
ATATCCAGCTGGTCTGTGGTACTTTAGTTTGAAAGGGTGTTTTTTTATCC
CGGACCCCCGGACTGTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no380_d07.b1 MSMg01no380_d07.b1 CHROMAT_FILE:
MSMg01no380_d07.b1 PHD_FILE: MSMg01no380_d07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:21:12 2005
         (244 letters)



>mm_chr9_119329802_119330445
          Length = 644

 Score =  449 bits (232), Expect = e-131
 Identities = 241/244 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagccccaggctgcacgccctcacgaacggtaagacagcaagggagcccgaggacaggag 60
           |||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct: 353 cagccccaggctgcacgccctcacaaacggtaagacagcaaggaagcccgaggacaggag 294

                                                                       
Query: 61  ggccctaacctcaatttcacatctactggatccacccgagtctctaaattacaggaatgg 120
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 293 ggccctaacctcaatttcacatctactggatccaccggagtctctaaattacaggaatgg 234

                                                                       
Query: 121 gcaaggctgcagggatgagcaattcttactccctgtgtgtgcaggagccatggaggctgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 233 gcaaggctgcagggatgagcaattcttactccctgtgtgtgcaggagccatggaggctgt 174

                                                                       
Query: 181 cagagtaggcatcagatcccctgggctggaggtacaggagtttgagagccaccagatgtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 173 cagagtaggcatcagatcccctgggctggaggtacaggagtttgagagccaccagatgtg 114

               
Query: 241 ggtg 244
           ||||
Sbjct: 113 ggtg 110


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no380_d07.g1 MSMg01no380_d07.g1 CHROMAT_FILE:
MSMg01no380_d07.g1 PHD_FILE: MSMg01no380_d07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:21:12 2005
         (531 letters)



>mm_chr9_119139767_119140697
          Length = 931

 Score = 1027 bits (531), Expect = 0.0
 Identities = 531/531 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgactgacaggatgtcaactgctagccagaggcaggcacagaggcacacctgggaagaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgactgacaggatgtcaactgctagccagaggcaggcacagaggcacacctgggaagaag 260

                                                                       
Query: 61  ttgtacccactctgggcaagcagtaaggcaggtaaagagacatagaaggagacaggaagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgtacccactctgggcaagcagtaaggcaggtaaagagacatagaaggagacaggaagt 320

                                                                       
Query: 121 aggacagaaagggagggaatcaggcatatcaggggaagagggagaagaacagatgcaggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggacagaaagggagggaatcaggcatatcaggggaagagggagaagaacagatgcaggc 380

                                                                       
Query: 181 agctgggcagataagggacacgctgagagatacaaacaagagaccatccaaagacaacag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agctgggcagataagggacacgctgagagatacaaacaagagaccatccaaagacaacag 440

                                                                       
Query: 241 ccactcgggcagcagagcactcagagaaagttacagtggcattcagagcccaaggttggg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccactcgggcagcagagcactcagagaaagttacagtggcattcagagcccaaggttggg 500

                                                                       
Query: 301 cacaggttggcctatgatgcccaatgggggagtggaccaggatgactggcaaaggagaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cacaggttggcctatgatgcccaatgggggagtggaccaggatgactggcaaaggagaaa 560

                                                                       
Query: 361 acagacataaaaacaagatacagagcagcaagtatcagaggcacagggtcagacagagta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acagacataaaaacaagatacagagcagcaagtatcagaggcacagggtcagacagagta 620

                                                                       
Query: 421 cctgacacaccacacaagtgggcacacagacagcagaacatcctacctcattctttaggg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cctgacacaccacacaagtgggcacacagacagcagaacatcctacctcattctttaggg 680

                                                              
Query: 481 actgaggccggttctcaggatagtcccagcctgagtcacaggcctgtgtct 531
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 actgaggccggttctcaggatagtcccagcctgagtcacaggcctgtgtct 731


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 931
Length adjustment: 10
Effective length of query: 521
Effective length of database: 921
Effective search space:   479841
Effective search space used:   479841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)