BAC Information

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BAC

Clone NameMSMg01-380E19
Chromosome9 (Build37)
Map Location 20,563,772 - 20,564,311
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr58, Olfr859, Olfr860, GA_x5J8B7W6RL5-13004417-13003354, Olfr862, Olfr77, EG665823, Olfr863-ps1, Olfr864-ps1, Olfr865-ps1, Olfr866, Olfr867, Olfr868, Olfr869, Olfr870, Olfr871, Olfr872, Olfr39, Olfr873, Olfr18, Zfp560, 4921534A09Rik, EG624824, Zfp26, Zfp426, 5730601F06Rik, 7030419G21Rik, LOC100041205, 2210010B09Rik, 5730577I03Rik, Fbxl12, Ubl5, Pin1, Olfm2
Downstream geneCol5a3, Rdh8, A230050P20Rik, Angptl6, Ppan, Eif3s4, Dnmt1, Edg5, Mrpl4, Icam1, Icam4, Icam5, Glp1, B230118G17Rik, Raver1, Tyk2, Cdc37, Pde4a, Keap1, Edg8, Atg4d, BC021438, Cdkn2d, Ap1m2, Slc44a2, Ilf3, Qtrt1, Dnm2, Tmed1, AB124611, Carm1, Yipf2, 1810026J23Rik, EG666043, Smarca4, Ldlr, Spc24
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-380E19.T7 (MSMg01no380_e19.b1)MSMg01-380E19.TJ (MSMg01no380_e19.g1)
ACCAG484708AG484709
length733747
length of high quality
(start - end)
537 (55 - 591)140 (71 - 210)
definitionCHROMAT_FILE: MSMg01no380_e19.b1 PHD_FILE: MSMg01no380_e19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:21:20 2005CHROMAT_FILE: MSMg01no380_e19.g1 PHD_FILE: MSMg01no380_e19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:21:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXGTTTGCCTGAACTATGTGAAACCCGGTCCTGAAAACAAAACAACAG
GTCTGGCAGTGATGGCACACGCCATTAGTCCTAGCACTAGGGTGGCAGAG
ACAGGAGGATCTCTGTGAGTTCAAGGCCAGCCTGGTCTACAGAGTAAGTT
CCAGGAGAGCCAGGGCTACACAGACAAACCCTGTTTAGAAAAACCAAAGC
AAGCAAACAAACAAACAACACCACCAAACAAACAACAGGAGTTAGGGAGA
TGGGTCTGTCAGTAGTCTGCTTACTGAAGTGTGAAGGCCTGAATTTAATC
CTCAAGATTGGGTGTGGTGACAGTCGCCTGTAATCCCAGCACCAAGGAGG
CAGAGACACAGGGTCCCTGGCTGAATCAGTGAGTTTCCAGTTCAGTGAGG
GACCATGTTCAATAATTTAAAAAAAAAAAGGTACTGAAAGTAGAAGGAGG
TCCTCTTGGAAACAAGAAGTTCAGCAGAAAGTACAGGGGTGCACATGATC
CAAATATGTTGTTTACATAAGTGAAGCCGGCAAATGAAGCAAAGAAGCAA
CTGTTTCCATACATGTACTCACACAGGGNCCTGCCCCCAATGTGTGTACA
CCTTTACACCCATATAAAAAGTTCAGGAATAACAAACCCTTANTAGGGCC
TATGAGATGGCTTGCTGTATTTGCCCAAGGAGT
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCAGGACAGCCAGGGCTACAGAGAAACCCTG
TCTCAGGGGAAAAAAGGCAGCTTCACTCAGTTCCAGGTGGCTCAGNTCTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAGATTTATTT
ATTATTATATGTAAGTACACTGTAGCTGTCTTCAAACACACCAAAAAAGG
GAGTCAAATCTTGTTAGGAATGGTTGTGAGCCACCATGGGGTTGCTGGGA
TTTGAACTCTGGATTTTCAAAAAAGCAGTCGGGTGCTCTTACCCACTGAG
CCATCTCACCAGCCCCATGGGGGCTCAGTTCCTAACAACACCTGCTCCTC
TTGCAAAGGAGGACCTGGGTTCAGGGCCCAGCACCCATGGTGCCTCACAG
CCATTGGTACCTCCAGTTCGAGGGGACCTGACACCCTCTGACTTCCACAG
GCACTGTACAATGGGGTGCATAGTCCCACTTACATACAGGCAAAGCACTC
ATGGACAGGACATTAAATCTAAACTTTTTTGGTTAAAAACAAATACATGG
GTCTGAGCACTGGGGTCACAACTGCCTTGAAACCCTAGCTCTAAGGGGCC
TAACTCTCCTGGGCCCTCCAAGTACCCGCCTTTTATCCTAAATAATAAAA
GTCCTTTTTTAAAGCCCTTCCCTTCTGGGAAAAAGGGGGTCCCTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no380_e19.b1 MSMg01no380_e19.b1 CHROMAT_FILE:
MSMg01no380_e19.b1 PHD_FILE: MSMg01no380_e19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:21:20 2005
         (537 letters)



>mm_chr9_20563575_20564511
          Length = 937

 Score =  948 bits (490), Expect = 0.0
 Identities = 525/540 (97%), Gaps = 7/540 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gcctgaactatgtgaaacccggtcctgaaaacaaaacaacaggtctggcagtgatggcac 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 gcctgaactatgtgagacccggtcctgaaaacaaaacaacaggtctggcagtgatggcac 257

                                                                       
Query: 65  acgccattagtcctagcactagggtggcagagacaggaggatctctgtgagttcaaggcc 124
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 atgccattagtcctagcactagggtggcagagacaggaggatctctgtgagttcaaggcc 317

                                                                       
Query: 125 agcctggtctacagagtaagttccaggagagccagggctacacagacaaaccctgtttag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 agcctggtctacagagtaagttccaggagagccagggctacacagacaaaccctgtttag 377

                                                                       
Query: 185 aaaaaccaaagcaagcaaacaaacaaacaacaccaccaaa-caaacaacaggagttaggg 243
           |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct: 378 aaaaaccaaagcaagcaaacaaacaaacaacaacaccaaaacaaacaacaggagttaggg 437

                                                                       
Query: 244 agatgggtctgtcagtagtctgcttactgaagtgtgaaggcctgaatttaatcctcaaga 303
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 agatgggtctgtcagtagactgcttactgaagtgtgaaggcctgaatttaatcctcaaga 497

                                                                       
Query: 304 ttgggtgtggtgacagtcgcctgtaatcccagcaccaaggaggcagagacacagggtccc 363
           |||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 498 ttgggtgtagtgacagtcgcctgtaatcccagcaccagggaggcagagacacagggtccc 557

                                                                       
Query: 364 tggctgaatcagtgagtttccagttcagtgagggaccatgttcaataatttaaaaaaaaa 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 tggctgaatcagtgagtttccagttcagtgagggaccatgttcaataatttaaaaaaaaa 617

                                                                       
Query: 424 aa------ggtactgaaagtagaaggaggtcctcttggaaacaagaagttcagcagaaag 477
           ||      |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 618 aaaaaaaaggtactgaaagtagaaggaggtcctcttggaaacaagaggttcagcagaaag 677

                                                                       
Query: 478 tacaggggtgcacatgatccaaatatgttgtttacataagtgaagccggcaaatgaagca 537
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 678 tacaggggtgcacatgatccaaatatgttgcttacataagtgaagccggcaaatgaagca 737


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 937
Length adjustment: 10
Effective length of query: 527
Effective length of database: 927
Effective search space:   488529
Effective search space used:   488529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)