BAC Information

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BAC

Clone NameMSMg01-380F16
Chromosome9 (Build37)
Map Location 123,951,486 - 123,951,997
singlet/doubletsinglet
Overlap genenone
Upstream geneTgm4, Zdhhc3, Exosc7, Clec3b, Cdcp1, Tmem158, Scp2-ps2, Lars2, Limd1, Sacm1l, Slc6a20, Xtrp3s1, Ccr9, LOC100043855, Lztfl1, Fyco1, Cxcr6, Xcr1, LOC100040443, LOC100043858, LOC671399, Ccr1, Ccr1l1, Ccr3
Downstream geneCcr2, Ccr5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-380F16.T7 (MSMg01no380_f16.b1)MSMg01-380F16.TJ (MSMg01no380_f16.g1)
ACCAG484750AG484751
length744746
length of high quality
(start - end)
516 (41 - 556)490 (69 - 558)
definitionCHROMAT_FILE: MSMg01no380_f16.b1 PHD_FILE: MSMg01no380_f16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:21:24 2005CHROMAT_FILE: MSMg01no380_f16.g1 PHD_FILE: MSMg01no380_f16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:21:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
AGGGCTTCCTACATGCTAGGCAATTTTTCTATTATCAGGCTACATCCACA
GCGCTGGAGAGCACGTTGCTGTCTTGTGACAGGACTAAGATATTACTAGA
TGACTTGCTCCATTCTGGTCTGCAGGGACTTCACTATCACAACTTCTAGT
GGGATACTGCAATGGGTCATACTGTCATCAGAACTGTACTGACTGAATTT
GGGTAGTAGGAGTAACAAAAATCCTGAATGTGGTGATACATATCTGACAA
TGACAAATAAACCCAGAGGAAATACCAGCCTCCTGTTTTAGGGAAGAGCA
TAAAGTTTGATGATCTAGGGCCTTAGAAGACAATCTCTTCAAAGCTAAGG
ACTGGAGGAGGTGGAGATGGGATAGTACAGGTAATCTATGGCTGCATAAC
AATGTGTAAGCAAACTAGCTTAAAACAACTGTACTTATTTGATTTCCTTT
CCATTTTTGAGGGCTGCACCAGAGAAGGACTATGAATGATAATCTATAAG
AGGTGAACAAAGACCAAAAGCATGTCTCTTGCGGGAGGCAAGAAGGAGTC
TATCCCCAGGCTGATCATTCTTGTGAGCTGAGGATGGCAGGATACTGGGA
TCAAGATAAAGCTGGTATGAATGGTTTGGCTTGGTGCCTTCCTTAAGCTT
TATGGAATTTAATCCGGGCGGACCATTTTCCTCCATGAGACTGG
GCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTAATTACTGTTGGTGAGATTAAATGTTGATTC
AGCCACTATGGAAACCAGTGAGAAGTAGTCTAGAGAGTAGGATAATAGGA
GATATATGCTGTAAGAGAGATTACAGGAATAATGGATAATAGAAGAATAA
TAAACTTAGACTGAGGAGGGATAGGAAGTAAAATTCAGGATAGTGAATAA
GGACTGATAAATAACATAAAGAACAAAAGAGCCATAGTGAAAAATATTAT
TATACAGTATTGTGATAAATTATTTTATAATGTATATGTATAGAATGTAC
TTATATTCTCTATTTGTATTTATTCATGTCTAAGTTATTTCTTATTTCTA
TGATAAGATACTATGATCAAAGCAATGTATAGAAAACAGTGTTCATTGAG
GGTTTACAGTTTCAGGGAGTGAGCCAATACCACCATGTTATGGAGTATGG
CTCAGGCAGACAGGCATAGCACGGGTATAGAGCTTACACCCTTATCTGTG
AAGAATTGTGTTGGAATTTTGATGTCTTTTGATGAATCTGTATATGGGAA
TTTTTGGTATTTAACAGGGAATCCTGTTAACTGGGGTATAGGACTTTGTA
CTTGTGAGTACCGATTAAAGTTGTCCCCACGCTCCGCAAACTGTTTTGTT
TCTGGCCCCCCATTCCCTTTCAATGGCGCACCCCATTTCCCTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no380_f16.b1 MSMg01no380_f16.b1 CHROMAT_FILE:
MSMg01no380_f16.b1 PHD_FILE: MSMg01no380_f16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:21:24 2005
         (516 letters)



>mm_chr9_123951282_123952197
          Length = 916

 Score =  907 bits (469), Expect = 0.0
 Identities = 502/513 (97%), Gaps = 2/513 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaggg-cttcctacatgctaggcaatttttctattatcaggctacatccacagcg 63
           |||||||||| |||  ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagggcctt-gtacatgctatgcaatttttctattatcaggctacatccacagcg 263

                                                                       
Query: 64  ctggagagcacgttgctgtcttgtgacaggactaagatattactagatgacttgctccat 123
           |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 264 ctggagagcatgttgctgtcttgtgacaggactaagatattactagatgacttgctccgt 323

                                                                       
Query: 124 tctggtctgcagggacttcactatcacaacttctagtgggatactgcaatgggtcatact 183
           |||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 324 tctggtctgcagggacctcactatcacaacttctactgggatactgcaatgggtcatact 383

                                                                       
Query: 184 gtcatcagaactgtactgactgaatttgggtagtaggagtaacaaaaatcctgaatgtgg 243
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 384 gtcatcagaactgtactgactgaatttgagtagtaggagtaacaaaaatcctgaatgtgg 443

                                                                       
Query: 244 tgatacatatctgacaatgacaaataaacccagaggaaataccagcctcctgttttaggg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tgatacatatctgacaatgacaaataaacccagaggaaataccagcctcctgttttaggg 503

                                                                       
Query: 304 aagagcataaagtttgatgatctagggccttagaagacaatctcttcaaagctaaggact 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 aagagcataaagtttgatgatctagggccttagaagacaatctcttcaaagctaaggact 563

                                                                       
Query: 364 ggaggaggtggagatgggatagtacaggtaatctatggctgcataacaatgtgtaagcaa 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 564 ggaggaggtggagatgggatagtacaggtaatctatggctgcataacaatgtgtacgcaa 623

                                                                       
Query: 424 actagcttaaaacaactgtacttatttgatttcctttccatttttgagggctgcaccaga 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 actagcttaaaacaactgtacttatttgatttcctttccatttttgagggctgcaccaga 683

                                            
Query: 484 gaaggactatgaatgataatctataagaggtga 516
           ||||| |||||||||||||||||||||||||||
Sbjct: 684 gaagggctatgaatgataatctataagaggtga 716


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 916
Length adjustment: 10
Effective length of query: 506
Effective length of database: 906
Effective search space:   458436
Effective search space used:   458436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)