BAC Information

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BAC

Clone NameMSMg01-380G02
Chromosome9 (Build37)
Map Location 79,776,167 - 79,776,468
singlet/doubletsinglet
Overlap geneFilip1
Upstream geneLOC436085, LOC235509, LOC666479, Col12a1, Cox7a2, Tmem30a, LOC100041218
Downstream geneLOC666490, Senp6, LOC100041249, Myo6, Impg1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-380G02.T7 (MSMg01no380_g02.b1)MSMg01-380G02.TJ (MSMg01no380_g02.g1)
ACCAG484769AG484770
length799748
length of high quality
(start - end)
312 (42 - 353)179 (65 - 243)
definitionCHROMAT_FILE: MSMg01no380_g02.b1 PHD_FILE: MSMg01no380_g02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:21:26 2005CHROMAT_FILE: MSMg01no380_g02.g1 PHD_FILE: MSMg01no380_g02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:21:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TGTCGCCGCTATACGATTACTATATCCAGAGGATCCGCGTAATTCTCCCC
CTTTTTCATGGGTACAGATTTTATAATAGGACCTTAAAAATAGTTGGAAG
TATTAGGTATGACACTGGCCTTCAAATACAATGTATAGAGAAACTGTAAA
ATTCCACTGTTGGAGCTGGTACTGAAACTTGGTAGTTCAGGCCAGGCTGC
TTTCGTGTGATGCCCTGTGCTCAATCCCCAGAACCACACTTAAAAGAAGT
CTTTAAATTTTAGCATCTATACATTTAAACAAGCGCGTGGTATATTCTTC
CCAATACCAAAATATAAATCAAGTAGTGACCGAGATATATCTCTCGAAGG
TACCCTAAGTGCGTGGGTCATGCCGTTCTCAGAAGATATACGTTATTAAA
TGAACCCGCGCCAGGTGTGGCCATACCACCCTCCCACTCACGTTCAGTCA
AATCCCTGAGGCCACCACATACTGCAAGCTCCTGTCATCGCTCTTGCCTG
CCCACCATAATTATACGACAACTCTCCCCTTTATGAGCCCCCCCTATTTT
TGTTGTTCCACCTGTTTCCATTCTTTTCTATACCCGGCTCCGCCAACTCT
TCCCCCTGTCCACTTTAATTCTGATCCTGCTCTCTATTTCTTCCTCCCCT
TTCTTTCATTCCATAACTTTTACTCTTTTCCTCCCCCCATCTTCTTTTTC
TAATTCCCCTCCTCCTTTACTCCTTCCCCCTCCTTGTCCTTCTTATCTCT
ACCCTCTATGTTCCTCCCTCTTTTCCTTCAACTTATCTTCTCTTCTCCG
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCAAGTTATGGAGGCTCAGCCAGGCGGTGGTGGCACA
AGCCTTTAATACCAGCACTTGGGAGGCAGAGGCAGGTGGATTTCTGAGTT
CGAGGCCAGCCTGGTCCAGGTGAGTTCCAGGACAGTCAGTGCTACATAGA
GAAACCCTGTCTCAATCCCCCCACCCCCCAAAAAAAACATAATTTAACAA
AAACAAAGTTATGGAGGCTCACTGCACACAGACAGAAAGGTGGCATTAAG
TAGCCATATTTTGTACTGAGTGACGATGAGAGGATACTTTCTTGGTACAT
GTGAATTAAGCAGTGATTTATCAGCTGACTGCCATTGTAATCCTAAGACA
TAATTGTCTGACATATGTAATTACAATGTATATATTCCACCATAGCATAT
TCTGCCTACTAGTTCCTAAACTTTCCGAGAATTATTACATACTGATCAGG
ATGCTTACGGATTTCTTTGCTTAGCAGACGGGTACGGGCAGCTTATTCGT
ATCGCTACACAGCGTCTATTCTACGTTTTTTGACAATTTACTTTTCTGTC
TTATCTTACCTTCCCCTTTTTTTCTTTTGGTTTTTATCCTCCTCCTCACT
CTTTTTTCCTCATCGCTTTTGATCTCTCTCTTCCTTCTGATTATTGTCTT
CCCATATTTCTTCCTTTTTTTTTTTTCCCCCCCTCTACTTTTCCATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no380_g02.b1 MSMg01no380_g02.b1 CHROMAT_FILE:
MSMg01no380_g02.b1 PHD_FILE: MSMg01no380_g02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:21:26 2005
         (312 letters)



>mm_chr9_79775952_79776668
          Length = 717

 Score =  522 bits (270), Expect = e-152
 Identities = 292/302 (96%), Gaps = 5/302 (1%)
 Strand = Plus / Plus

                                                                       
Query: 16  catgggtacagattttataata-----ggaccttaaaaatagttggaagtattaggtatg 70
           ||||||||||||||||||||||     |||||||||||||||||||||||||||||||||
Sbjct: 216 catgggtacagattttataataaaataggaccttaaaaatagttggaagtattaggtatg 275

                                                                       
Query: 71  acactggccttcaaatacaatgtatagagaaactgtaaaattccactgttggagctggta 130
           |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct: 276 acactggccttcaaatacaatgtagagagaaactgtaaaattccactgttggagctggga 335

                                                                       
Query: 131 ctgaaacttggtagttcaggccaggctgctttcgtgtgatgccctgtgctcaatccccag 190
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 ctgaaacttggtagttcaggccaggctgctttcgtgtgatgccctgtgctcaatccccag 395

                                                                       
Query: 191 aaccacacttaaaagaagtctttaaattttagcatctatacatttaaacaagcgcgtggt 250
           | |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 396 agccacacttaaaagaagtctttaaattttagcatctatacatttaaacaagcgtgtggt 455

                                                                       
Query: 251 atattcttcccaataccaaaatataaatcaagtagtgaccgagatatatctctcgaaggt 310
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 gtattcttcccaataccaaaatataaatcaagtagtgaccgagatatatctctcgaaggt 515

             
Query: 311 ac 312
           ||
Sbjct: 516 ac 517


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 717
Length adjustment: 9
Effective length of query: 303
Effective length of database: 708
Effective search space:   214524
Effective search space used:   214524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)