Query= MSMg01no380_i09.b1 MSMg01no380_i09.b1 CHROMAT_FILE:
MSMg01no380_i09.b1 PHD_FILE: MSMg01no380_i09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:21:37 2005
(504 letters)
>mm_chr9_41302409_41303312
Length = 904
Score = 951 bits (492), Expect = 0.0
Identities = 501/504 (99%)
Strand = Plus / Plus
Query: 1 ctgggtttgcaaacagggacagtatctagtgtccacacagaagatccggcttcagttaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgggtttgcaaacagggacagtatctagtgtccacacagaagatccggcttcagttaag 260
Query: 61 agacagctaagtttccttagtagcgacagctgtacagctggtcggggagtcaatggaagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agacagctaagtttccttagtagcgacagctgtacagctggtcggggagtcaatggaagg 320
Query: 121 ttgaaaccctgtatacaatttcttttcattcctttagtttcaccacaaagtagggaacat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgaaaccctgtatacaatttcttttcattcctttagtttcaccacaaagtagggaacat 380
Query: 181 tatctcttaaaatctcaaaaactgttcaaaagaaaatatggcccgagtataagtaaaaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tatctcttaaaatctcaaaaactgttcaaaagaaaatatggcccgagtataagtaaaaat 440
Query: 241 atttgttcaaaatttataatgaagccaagcacaatagatgaagtatgttataagtgctcc 300
|||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atttgttcaaaaaataaaatgaagccaagcacaatagatgaagtatgttataagtgctcc 500
Query: 301 tcatagggcattgttctatgaccagtggaccagtggactggggtttttcaaaagggagtc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcatagggcattgttctatgaccagtggaccagtggactggggtttttcaaaagggagtc 560
Query: 361 catgtctttttctctagggtgtctgctttgctggggcacatttctctggccaatagagtc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 catgtctttttctctagggtgtctgctttgctggggcacatttctctggccaatagagtc 620
Query: 421 ttcaatgctctgccaatattcatcactactaataactagggatctctgcataatgagttt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttcaatgctctgccaatattcatcactactaataactagggatctctgcataatgagttt 680
Query: 481 ttaaggctggtatttatgtccatg 504
||||||||||||||||||||||||
Sbjct: 681 ttaaggctggtatttatgtccatg 704
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 904
Length adjustment: 10
Effective length of query: 494
Effective length of database: 894
Effective search space: 441636
Effective search space used: 441636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no380_i09.g1 MSMg01no380_i09.g1 CHROMAT_FILE:
MSMg01no380_i09.g1 PHD_FILE: MSMg01no380_i09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:21:37 2005
(346 letters)
>mm_chr9_41475324_41476069
Length = 746
Score = 615 bits (318), Expect = e-180
Identities = 336/350 (96%), Gaps = 14/350 (4%)
Strand = Plus / Minus
Query: 1 attgacatatacagcaaggtaaaagagggaatttaaagataagaagggagagttattaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 attgacatatacagcaaggtaaaagagggaatttaaagataagaagggagagttattaaa 466
Query: 61 ataataataaaatatatacagaggtagcatgcttaatgagcatggtagaattgaaatctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 ataataataaaatatatacagaggtagcatgcttaatgagcatggtagaattgaaatctt 406
Query: 121 tgtctatagaaggaaacagttcattagaaatagagaagctgggcttttgtctggttccat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 tgtctatagaaggaaacagttcattagaaatagagaagctgggcttttgtctggttccat 346
Query: 181 ctttactggagtaatgcagaaccttatacaagttcaaactttttggtactatctcggcac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 ctttactggagtaatgcagaaccttatacaagttcaaactttttggtactatctcggcac 286
Query: 241 aatcaca-------tttttttctcacccaaagcttctgtaaatagaaaatagtagatggg 293
||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 285 aatcacaaaaaaac-------ctcacccaaagcttctgtaaatagaaaatagtagatggg 233
Query: 294 aaggaatgtaaagatgtgtaagtgagcaagctcactccagagagtaaaca 343
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 232 aaggaatgtaaagatgtgtaagtgagcaagctcactccagagagtaaaca 183
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 346
Length of database: 746
Length adjustment: 9
Effective length of query: 337
Effective length of database: 737
Effective search space: 248369
Effective search space used: 248369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
