BAC Information

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BAC

Clone NameMSMg01-381C14
Chromosome9 (Build37)
Map Location 97,145,143 - 97,351,155
singlet/doubletdoublet
Overlap geneTrim42, Clstn2
Upstream geneTfdp2, 1110029I05Rik, Atp1b3, BC043934, Rnf7, LOC667174, Rasa2, Zbtb38, EG622512, LOC100040230, LOC667216, Acpl2, LOC19034, LOC667226, Spsb4, LOC100040254, Slc25a36, EG622727, LOC384971
Downstream geneLOC667298, Nmnat3, Rbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-381C14.T7 (MSMg01no381_c14.b1)MSMg01-381C14.TJ (MSMg01no381_c14.g1)
ACCAG485367AG485368
length737773
length of high quality
(start - end)
505 (36 - 540)496 (69 - 564)
definitionCHROMAT_FILE: MSMg01no381_c14.b1 PHD_FILE: MSMg01no381_c14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:22:28 2005CHROMAT_FILE: MSMg01no381_c14.g1 PHD_FILE: MSMg01no381_c14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:22:28 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(97,350,654 - 97,351,155)(97,145,143 - 97,145,637)
sequence
XXXXXXXXXXXXXXXXXXXXXXTTTCCACAGGAGCGCGGAATTCATTGAA
TTTCCATGTCATAAACTTTTTACTCTCTTATTTCTCATTTTCTACTCAAA
ACTTAGCCTGCTAGACATCTAGAAAGCTAGCCACTAGGCAGATCCATGTG
AGGCTGACTCTCACCCTCAATACATAAAAAGCATCCATCCCTCCCCCATC
CCTCTACCCCAAAGAAAACACCCAACAGCTCCCTAGTGGTCATTGCCTTG
AATTGAACAGCTGGAAAACTCTGGGTTCTTTCATTAAAGCTCTCTTAGAA
GTTCACAGGAGACTGGAGAAAACGCAAAAGAAACCGGTAAATGAGCAACC
AAAATCCCACTTGTTATTTCTGAATTGAAGAAATCAGACAAATATTCCTA
AGGGTTGGATGCCTAGACCCAGAGACCTGGGTAATCACTGAGCACAGGGG
CTTCCTCCTCTGCTGTGGCAAGTGCTAACTCCCCAGGCTAAGCACCTTCC
TGGCAGGGCTCAGTCCATAATGATTTCTAAGCAGGAGTGTTCATTATCTG
GGACTGATTTTCATTTCAGCCCTGTTCATGTCTTCGCTCTAAAAATGATC
CTAAAGATTTGCGGCTGTTCCAATTCATAGCAACACAATCCGCAGAAAGT
CCTACCCAGCAAAATTTCAAAATAAAAGCCCCCTTGCTTTATGACTCACT
ATTACTTGCCAAAAAAAAAAGGGTTTTCTTAATCCCC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTGGGATAGAGTTAGGTATAGGGGATTCATCAG
GGAAGATGTGACAAGATGCATGGTTCCTGAGCACAGGTAATCAGCCACAT
GGCAGAATATAGGTTAAAATAAATGGGGTATTTTAAGCTATGGCCTTGTC
AGAGAAGAAACTAGCTATATGGCCAAGGTATTTGTAAATATATTTTGAGT
CTGAGTCTTATATTTGGGAGCATGAGGCTGGAAGGAAGAACTAGACCAAA
CTTCTATGATGCTGTTAGTATCTCCCCAATACTAAATGTAAAAGTTAACT
TGGAGTGTCTGCAAAACCACAGCCCTTTTCTCTAGTGTCTTCCTACTGTC
TGGAGAGGACTGACTGATGAAATAAGTGTTCAGCCATAATGTGACCTTAA
GAATAATGTTAGCAGCCATCAATCATGGTAAACTTCCGCTTGTGTGCACC
ATTATTAACCTGTACTTCTTGTGTCTCTTCATGACCTATGTGGACTTTTT
GTTAAATGCTGAAGTTTTTAATATAAAAAAGTTTTAAGCCGGGCGTGGTG
GCGCACGCGTTTAATCCCAGCACTCGGGAAGCGAGGCCAGGCGGATTCTG
AGTTCGAGGCCTGCCTGGTCTAAAAAGGAGGTCCCAGAACGCCCGGGCTT
TTAAGAAAAACCTTGGTTCCAAAAAAAAAAAGTTTTTTACTTATTAAAAG
GGGGGTTGTCCCCCTTTTTTAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no381_c14.b1 MSMg01no381_c14.b1 CHROMAT_FILE:
MSMg01no381_c14.b1 PHD_FILE: MSMg01no381_c14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:22:28 2005
         (505 letters)



>mm_chr9_97350451_97351355
          Length = 905

 Score =  963 bits (498), Expect = 0.0
 Identities = 501/502 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   gaattcattgaatttccatgtcataaactttttactctcttatttctcattttctactca 63
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 gaattcattgaattttcatgtcataaactttttactctcttatttctcattttctactca 646

                                                                       
Query: 64  aaacttagcctgctagacatctagaaagctagccactaggcagatccatgtgaggctgac 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 aaacttagcctgctagacatctagaaagctagccactaggcagatccatgtgaggctgac 586

                                                                       
Query: 124 tctcaccctcaatacataaaaagcatccatccctcccccatccctctaccccaaagaaaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 tctcaccctcaatacataaaaagcatccatccctcccccatccctctaccccaaagaaaa 526

                                                                       
Query: 184 cacccaacagctccctagtggtcattgccttgaattgaacagctggaaaactctgggttc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 cacccaacagctccctagtggtcattgccttgaattgaacagctggaaaactctgggttc 466

                                                                       
Query: 244 tttcattaaagctctcttagaagttcacaggagactggagaaaacgcaaaagaaaccggt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 tttcattaaagctctcttagaagttcacaggagactggagaaaacgcaaaagaaaccggt 406

                                                                       
Query: 304 aaatgagcaaccaaaatcccacttgttatttctgaattgaagaaatcagacaaatattcc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 aaatgagcaaccaaaatcccacttgttatttctgaattgaagaaatcagacaaatattcc 346

                                                                       
Query: 364 taagggttggatgcctagacccagagacctgggtaatcactgagcacaggggcttcctcc 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 taagggttggatgcctagacccagagacctgggtaatcactgagcacaggggcttcctcc 286

                                                                       
Query: 424 tctgctgtggcaagtgctaactccccaggctaagcaccttcctggcagggctcagtccat 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 tctgctgtggcaagtgctaactccccaggctaagcaccttcctggcagggctcagtccat 226

                                 
Query: 484 aatgatttctaagcaggagtgt 505
           ||||||||||||||||||||||
Sbjct: 225 aatgatttctaagcaggagtgt 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 905
Length adjustment: 10
Effective length of query: 495
Effective length of database: 895
Effective search space:   443025
Effective search space used:   443025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no381_c14.g1 MSMg01no381_c14.g1 CHROMAT_FILE:
MSMg01no381_c14.g1 PHD_FILE: MSMg01no381_c14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:22:28 2005
         (496 letters)



>mm_chr9_97144943_97145837
          Length = 895

 Score =  928 bits (480), Expect = 0.0
 Identities = 492/496 (99%), Gaps = 1/496 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgggatagagttaggtataggggattcatcagggaagatgtgacaagatgcatggttcct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgggatagagttaggtataggggattcatcagggaagatgtgacaagatgcatggttcct 260

                                                                       
Query: 61  gagcacaggtaatcagccacatggcagaatataggttaaaataaatggggtattttaagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagcacaggtaatcagccacatggcagaatataggttaaaataaatggggtattttaagc 320

                                                                       
Query: 121 tatggccttgtcagagaagaaactagctatatggccaaggtatttgtaaatatattttga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatggccttgtcagagaagaaactagctatatggccaaggtatttgtaaatatattttga 380

                                                                       
Query: 181 gtctgagtcttatatttgggagcatgaggctggaaggaagaactagaccaaacttctatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtctgagtcttatatttgggagcatgaggctggaaggaagaactagaccaaacttctatg 440

                                                                       
Query: 241 atgctgttagtatctccccaatactaaatgtaaaagttaacttggagtgtctgcaaaacc 300
           |||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgctgttaggaac-ccccaatactaaatgtaaaagttaacttggagtgtctgcaaaacc 499

                                                                       
Query: 301 acagcccttttctctagtgtcttcctactgtctggagaggactgactgatgaaataagtg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 acagcccttttctctagtgtcttcctactgtctggagaggactgactgatgaaataagtg 559

                                                                       
Query: 361 ttcagccataatgtgaccttaagaataatgttagcagccatcaatcatggtaaacttccg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ttcagccataatgtgaccttaagaataatgttagcagccatcaatcatggtaaacttccg 619

                                                                       
Query: 421 cttgtgtgcaccattattaacctgtacttcttgtgtctcttcatgacctatgtggacttt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 cttgtgtgcaccattattaacctgtacttcttgtgtctcttcatgacctatgtggacttt 679

                           
Query: 481 ttgttaaatgctgaag 496
           |||| |||||||||||
Sbjct: 680 ttgtaaaatgctgaag 695


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 895
Length adjustment: 10
Effective length of query: 486
Effective length of database: 885
Effective search space:   430110
Effective search space used:   430110
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)