Query= MSMg01no381_k13.b1 MSMg01no381_k13.b1 CHROMAT_FILE:
MSMg01no381_k13.b1 PHD_FILE: MSMg01no381_k13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:23:08 2005
(557 letters)
>mm_chr9_41163122_41164077
Length = 956
Score = 1054 bits (545), Expect = 0.0
Identities = 554/559 (99%), Gaps = 5/559 (0%)
Strand = Plus / Plus
Query: 1 attcctcatacttgtatgggaagtgttttgccatcgaactatctccttagcacttatttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attcctcatacttgtatgggaagtgttttgccatcgaactatctccttagcacttatttt 260
Query: 61 agtgatttatacaaaatgttatgagactcctaaaacagaaagtctcgaaaagggtccttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtgatttatacaaaatgttatgagactcctaaaacagaaagtctcgaaaagggtccttt 320
Query: 121 gataacacaggagtaaagtgtccttttgatagagaaacatggtggctcagggggacaagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gataacacaggagtaaagtgtccttttgatagagaaacatggtggctcagggggacaagt 380
Query: 181 ggttttcctgagctcttccagttgttaaggggtccaagcaatgccggaacccactctgtc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggttttcctgagctcttccagttgttaaggggtccaagcaatgccggaacccactctgtc 440
Query: 241 cagttctc--tttttcttctcggggttatatgcgaaattaaagagtaacttgccatttag 298
|||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cagttctccgtt---cttctcggggttatatgcgaaattaaagagtaacttgccatttag 497
Query: 299 aagtttcatgtaatttctctgtgactgttcgaagattgtaacatgacatttatttgtatg 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 aagtttcatgtaatttctctgtgactgttcgaagattgtaacatgacatttatttgtatg 557
Query: 359 gaagccactgttcctaaagtgctaaaatcatttctcccccttcctggcagtacaaaagta 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 gaagccactgttcctaaagtgctaaaatcatttctcccccttcctggcagtacaaaagta 617
Query: 419 agttacaccgtctggtttggattatcttccattctgaatcagtgtgactcaaatgaatga 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 agttacaccgtctggtttggattatcttccattctgaatcagtgtgactcaaatgaatga 677
Query: 479 gatttcactttgaagaatttaatatcaccgagaagatgctctggtttgtattatcttaaa 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 gatttcactttgaagaatttaatatcaccgagaagatgctctggtttgtattatcttaaa 737
Query: 539 tccaggagatcattcccac 557
|||||||||||||||||||
Sbjct: 738 tccaggagatcattcccac 756
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 956
Length adjustment: 10
Effective length of query: 547
Effective length of database: 946
Effective search space: 517462
Effective search space used: 517462
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no381_k13.g1 MSMg01no381_k13.g1 CHROMAT_FILE:
MSMg01no381_k13.g1 PHD_FILE: MSMg01no381_k13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:23:09 2005
(538 letters)
>mm_chr9_41302172_41303109
Length = 938
Score = 806 bits (417), Expect = 0.0
Identities = 417/417 (100%)
Strand = Plus / Minus
Query: 1 ttcccacctgtcccaaaaacattaatccatctttgtctacgagaacacttctatctccac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 ttcccacctgtcccaaaaacattaatccatctttgtctacgagaacacttctatctccac 358
Query: 61 acgtactgtcatttcttttaagcacactcaaacaaaagaaacatttggcttgacctagtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 acgtactgtcatttcttttaagcacactcaaacaaaagaaacatttggcttgacctagtt 298
Query: 121 ttttttgtctacctgtttccatgaagcaggttccatgagcaggtttctttggctcctcaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 ttttttgtctacctgtttccatgaagcaggttccatgagcaggtttctttggctcctcaa 238
Query: 181 gaactggctttcttgagatgtccaagtcttagagcgttctttcagaagccacttaagtca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 gaactggctttcttgagatgtccaagtcttagagcgttctttcagaagccacttaagtca 178
Query: 241 ggcattccccatcaccactggacccaattatgtcctccttgagaacgctaacgatgtcca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 ggcattccccatcaccactggacccaattatgtcctccttgagaacgctaacgatgtcca 118
Query: 301 gctgtggaaccccactagtaattttcattcttcctagcactggatatagcaaaggtgttt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117 gctgtggaaccccactagtaattttcattcttcctagcactggatatagcaaaggtgttt 58
Query: 361 gatgctattactcgttggcctctacttgagacacttcctctcttttctatgtctata 417
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57 gatgctattactcgttggcctctacttgagacacttcctctcttttctatgtctata 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 538
Length of database: 938
Length adjustment: 10
Effective length of query: 528
Effective length of database: 928
Effective search space: 489984
Effective search space used: 489984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
