Query= MSMg01no382_a17.b1 MSMg01no382_a17.b1 CHROMAT_FILE:
MSMg01no382_a17.b1 PHD_FILE: MSMg01no382_a17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:23:39 2005
(542 letters)
>mm_chr9_66155580_66156521
Length = 942
Score = 814 bits (421), Expect = 0.0
Identities = 495/539 (91%), Gaps = 36/539 (6%)
Strand = Plus / Plus
Query: 5 gaattccagatgtgtgacattatgcctggcatcacttgaccctatgggaagtttctctgt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccagatgtgtgacattatgcctggcatcacttgaccctatgggaagtttctctgt 264
Query: 65 cttattttgttttgtttctactgtgaatgttcagaatcttattgtccgttaagaattcaa 124
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 265 cttattttgttttgtttctactgtgaatgttcagaatcttattatccgttaagaattcaa 324
Query: 125 tcccac-atggcacgtcctaggctaggggacattttttacatctttcactgtttccttga 183
|||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 325 tcccacga-ggcacgtcctaggctaggggatattttttacatctttcactgtttccttga 383
Query: 184 tacgttggaaccagcaactgattcttagacatttccacatgactcacacttgttcattga 243
||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 384 tacattggaaccagcaactgattcttagatatttccacatgactcacacttgttcatt-- 441
Query: 244 catacttcatttttattcctggtaccacttatagctgtaaaatgtaacaggaaatgcaca 303
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 -----------tttattcctggtaccacttatagctgtaaaatgtaacaggaaatgcaca 490
Query: 304 gaaatgttaaaattttatttcttgagccgggcgtagtggcacacgcctttaatcccagca 363
|||||||||||||||||||||||||||||||||| ||||| ||||||||| |||||||||
Sbjct: 491 gaaatgttaaaattttatttcttgagccgggcgtggtggcgcacgcctttgatcccagca 550
Query: 364 ctcgggaggcagaggcaggcagatttctgagttccaggccagcctggtctacaaagtgag 423
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 cttgggaggcagaggcaggcagatttctgagttccaggccagcctggtctacaaagtgag 610
Query: 424 ttccaggacagtcaggactacacagagaaaccctgtcttgaaaaaccaaaaaaaaaaaaa 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 ttccaggacagtcaggactacacagagaaaccctgtcttgaaaaaccaaaaaaaaaaaaa 670
Query: 484 tatatatatatatatattttttttttaaaagagattctaggctgcacatttttttcact 542
| ||||| |||||||||||||||||||||||||||| ||||
Sbjct: 671 -a-------------atttt------aaaagagattctaggctgcacatttttt-cact 708
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 942
Length adjustment: 10
Effective length of query: 532
Effective length of database: 932
Effective search space: 495824
Effective search space used: 495824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no382_a17.g1 MSMg01no382_a17.g1 CHROMAT_FILE:
MSMg01no382_a17.g1 PHD_FILE: MSMg01no382_a17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:23:39 2005
(499 letters)
>mm_chr9_66339692_66340590
Length = 899
Score = 965 bits (499), Expect = 0.0
Identities = 499/499 (100%)
Strand = Plus / Minus
Query: 1 cccaaaggctcctcaccattggttctcctttcatcaagattactgcaaccacaacttcct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 cccaaaggctcctcaccattggttctcctttcatcaagattactgcaaccacaacttcct 640
Query: 61 gatctgctaatgcaggtatgaggagaatgtaaatgctcactaaaacaactttgaataaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 gatctgctaatgcaggtatgaggagaatgtaaatgctcactaaaacaactttgaataaga 580
Query: 121 gggtctctgatctgagattatgggaggaagtgaggatggctctgcttgtgggctgaaaac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 gggtctctgatctgagattatgggaggaagtgaggatggctctgcttgtgggctgaaaac 520
Query: 181 cactgtagaagcatcagtctctcagacatctcctaccaacgtctctcttccatatacaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 cactgtagaagcatcagtctctcagacatctcctaccaacgtctctcttccatatacaga 460
Query: 241 tagacagaaggactaaggacacagacctgaagtctttttacattctcttcattttcattc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 tagacagaaggactaaggacacagacctgaagtctttttacattctcttcattttcattc 400
Query: 301 ctgcccttactcctgtgactacaggggatgacaagatttcttgcacaagcaaaggattct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 ctgcccttactcctgtgactacaggggatgacaagatttcttgcacaagcaaaggattct 340
Query: 361 ctgaacactaatattttaaaatacaaagacactcttacaaataaacaacaccgtcagatt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 ctgaacactaatattttaaaatacaaagacactcttacaaataaacaacaccgtcagatt 280
Query: 421 tctagagtatgcaagagcagcaaatatgccatttacctgcccttctgaattgctacccca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 tctagagtatgcaagagcagcaaatatgccatttacctgcccttctgaattgctacccca 220
Query: 481 ggcataaacatctccagtt 499
|||||||||||||||||||
Sbjct: 219 ggcataaacatctccagtt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 499
Length of database: 899
Length adjustment: 10
Effective length of query: 489
Effective length of database: 889
Effective search space: 434721
Effective search space used: 434721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
