Query= MSMg01no382_d05.b1 MSMg01no382_d05.b1 CHROMAT_FILE:
MSMg01no382_d05.b1 PHD_FILE: MSMg01no382_d05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:23:52 2005
(490 letters)
>mm_chr9_99580170_99581059
Length = 890
Score = 888 bits (459), Expect = 0.0
Identities = 477/483 (98%)
Strand = Plus / Plus
Query: 8 ggaattcggttatctgtaccatgttatatcattcttttcactactttcccatttaaaggt 67
|||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||
Sbjct: 208 ggaattcggttatctgcacaatgttatatcattcttttcactactctcccatttaaaggt 267
Query: 68 tttgtttgtttgtttttgttttttaaattaaaaactctgggaagtgctgccttggctctg 127
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 268 tttgtttgtttgtttttgttttttaaattaaaaactccgggaagtgctgccttggctctg 327
Query: 128 ccatgcagcctcgggagcaagattttttgagtatgaaggaggcaggtaaaaacttttatt 187
||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 328 ccacgcagcctcgggagcaagatttattgagtatgaaggaggcaggtaaaaacttttatt 387
Query: 188 tgaagggtcacttatgtagcgctaaatgatagtagccatgaatggcatggggctctgtgt 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 tgaagggtcacttatgtagcgctaaatgatagtagccatgaatggcatggggctctgtgt 447
Query: 248 cttcaatgcccatcaaatcctgttccttagtcaccctcccttcccctccccgacactttg 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 cttcaatgcccatcaaatcctgttccttagtcaccctcccttcccctccccgacactttg 507
Query: 308 gaagctgctcttgagaatttgaaacttcattatgctgtgtggattattgctagaagaagc 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 gaagctgctcttgagaatttgaaacttcattatgctgtgtggattattgctagaagaagc 567
Query: 368 aaggatagagccatccagccgtagaaacctcagaaccactaaggacgacacagcttagaa 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 aaggatagagccatccagccgtagaaacctcagaaccactaaggacgacacagcttagaa 627
Query: 428 acctagagtagaaggggccggctttacttttaatcaggtctccgtgtggaggcatatgcc 487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 acctagagtagaaggggccggctttacttttaatcaggtctccgtgtggaggcatatgcc 687
Query: 488 ctg 490
|||
Sbjct: 688 ctg 690
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 890
Length adjustment: 10
Effective length of query: 480
Effective length of database: 880
Effective search space: 422400
Effective search space used: 422400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no382_d05.g1 MSMg01no382_d05.g1 CHROMAT_FILE:
MSMg01no382_d05.g1 PHD_FILE: MSMg01no382_d05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:23:52 2005
(536 letters)
>mm_chr9_99753411_99754344
Length = 934
Score = 967 bits (500), Expect = 0.0
Identities = 527/538 (97%), Gaps = 6/538 (1%)
Strand = Plus / Minus
Query: 1 tcactgtctgagg-aatgatattgggctgagcg-tgccggggagttagaggccccagctt 58
||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct: 734 tcactgtctgaggaaatgatattgggctgagcgatgctggggagttagaggccccagctt 675
Query: 59 cactgcaggtaagacgttagaatttcaaactcttaatcctattgattctcggcccttttg 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 cactgcaggtaagacgttagaatttcaaactcttaatcctattgattctcggcccttttg 615
Query: 119 atccctttagcgcttgtcaggagccttgagtttctgtaatttgcggggtggggagagctg 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 atccctttagcgcttgtcaggagccttgagtttctgtaatttgcggggtggggagagctg 555
Query: 179 attggcttgggggttattatgacctcttttgtgtcgtttaattaataagaaaagttgcac 238
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 attggcttgggggttattatgacctcttttgtgtcgtttaattaataagaaaagttgca- 496
Query: 239 ccgcccgcccggctgctgggcctcctgaaggcctcctcccagcatcggctttccccaagg 298
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 ---cccgcccggctgctgggcctcctgaaggcctcctcccagcatcggctttccccaagg 439
Query: 299 cctcagcaatgatttgggtttggggaaaaagagcgaaacggatggtcatctggatgtcca 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 cctcagcaatgatttgggtttggggaaaaagagcgaaacggatggtcatctggatgtcca 379
Query: 359 ttttgtatggactgtaagcaagctctggttgtcctttgtagagtccacaagtgaatagaa 418
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 378 ttttgtatggactttaagcaagctctggttgacctttgtagagtccacaagtgaatagaa 319
Query: 419 taactgagagccacggggttcttttcaaggccagggagaggagagaaaagtcatgtttcc 478
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct: 318 taactgagagccacggggttcctttcaaggccagggagaggagagaaaagtcatatttcc 259
Query: 479 tgagtgtttaggtactgctgggcacttaacactcttaaccctctcaatagctttaggt 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 tgagtgtttaggtactgctgggcacttaacactcttaaccctctcaatagctttaggt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 934
Length adjustment: 10
Effective length of query: 526
Effective length of database: 924
Effective search space: 486024
Effective search space used: 486024
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
