BAC Information

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BAC

Clone NameMSMg01-382K20
Chromosome9 (Build37)
Map Location 38,071,752 - 38,072,133
singlet/doubletsinglet
Overlap genenone
Upstream geneCcdc15, Hepacam, Robo4, Robo3, BC024479, Esam1, Vsig2, Nrgn, Spa17, Siae, Tbrg1, Panx3, LOC666881, EG627798, Olfr160, Olfr151, Olfr874, Olfr875, Olfr876, Olfr877, Olfr145, EG627852, Olfr878, GA_x5J8B7W60AJ-1667802-1666911, Olfr880-ps1, Olfr881, Olfr882-ps1, Olfr883, Olfr884, Olfr1550-ps1, Olfr885, Olfr886-ps1, Olfr887, Olfr888, Olfr889, Olfr890, Olfr891, Olfr892-ps1, Olfr893, Olfr894, Olfr143
Downstream geneOlfr895, Olfr896-ps1, Olfr897-ps1, Olfr25, Olfr898, Olfr899, Olfr900, Olfr147, Olfr901, Olfr902, Olfr903-ps1, Olfr904, Olfr905, Olfr906, Olfr907, Olfr908, Olfr909, Olfr910, Olfr912, Olfr913, Olfr914, Olfr915, Olfr916, Olfr917, Olfr918, GA_x5J8B7W60AJ-925630-926226, Olfr919, Loh11cr2a, Olfr920, Olfr921, Olfr922, Olfr923, Olfr924, Olfr26, Olfr925-ps1, Olfr926, GA_x5J8B7W60AJ-719102-719883, Olfr928-ps1, GA_x5J8B7W60AJ-703922-704828, Olfr930, GA_x5J8B7W60AJ-666029-666595, Olfr1545-ps1, Olfr932-ps1, Olfr933, Olfr934, Olfr935, Olfr146, EG628171, Olfr937, LOC667260, Olfr938, Olfr939-ps1, GA_x5J8B7W60AJ-540286-540740, Olfr941-ps1, Olfr27, Olfr942-ps1, Olfr943, Olfr944, Olfr144, Olfr945
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-382K20.T7 (MSMg01no382_k20.b1)MSMg01-382K20.TJ (MSMg01no382_k20.g1)
ACCAG486525AG486526
length745701
length of high quality
(start - end)
606 (34 - 639)---
definitionCHROMAT_FILE: MSMg01no382_k20.b1 PHD_FILE: MSMg01no382_k20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:24:29 2005CHROMAT_FILE: MSMg01no382_k20.g1 PHD_FILE: MSMg01no382_k20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:24:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCTTTGT
CTCTCTCTATCTCTCTGTCTCTGTCTCTCTCTCTCTCCCTGTGTATGTGT
GTGTTCCCCTATCTTGTTTCTTTCTCTGCACTGTGCTCTTAAGTCTCCTC
TCCTTTCTGTTCTTATGAGAGTTGGGAATATCCTATCTTTGACTCATTCT
GTCAAATCTTTCTCTGATTAAACCTGTCATCCCCCCAATTAGATGTCACT
TTCAAACATGGCTGCTTCCTTCTATAAACTAGCCTTACTTTCATTGTTTG
GAATTAAAGGCATGAACTAAGGGTTTATCTGTATACCAGTTAGATCATAC
TGTAATTCAGAGCATATGTACTTTCCACCCTGATCACATAGACCTAGAAG
TTATTTAGATGTGATTCCTTGGCAGATGAATTGTGTTGCTAGATTAAAAT
TCCTCTAAAAAGTGATTATTGGGATAGTAGTATTTGGTGGATTAGTAGGA
CAAAGATACTACAAATGGAATATTGGAAATAATCTAGTCACTTTAACTAT
GGTAAGGAGAGTAAGACCAATACAAGAAAAGGAAGAGGTGAGAAAATACA
ATGAATGATGTTTTAAAAATCTATAAACAATTAAAAATGTATCTAANATT
ACAAAATTGACCTACACACACACATAATAAGCATACACATATACATACCT
ACATGCATATGCATATACATGTANGTGACATGATTGACAGNCTTN
NNNNNTTTAATTTTNNNNNNAAAAAANTTAATAAATTAAAAATGAGGGGT
TGTGGTTGTTTGGTGTTTTTTGTTTCATTTATNNGCNNCTTTNNNNNNNG
GGGGAGNNNNNNNGGCTATGGATATGGGGNTAAGGCCTGGGNCGGNCCGG
CCCTGGGCCGTCGAAATTTAGGTGGACACTAATAAGAAGGATTCGCCGNA
AATTCCAGGGACCAGGAAAAAGGGAAATGGGGTTTGGTTGGGGGAAACAG
GGTCAAAAGGGAAGGGAAAAGGGGATTTTGGGGAGGGGAAAATTTGGAAA
AAGGGAAAAAAATTTGGAAAAGGGGGAAAAAAAAAAAAAAATTTTTAAAA
AAAAAAAAAAAAAAAAATGGGGGGAGGTGGGAAAAAAAAAAAAAAAGTGC
CAACACCCCTAAAAAAAAAAAAAAAAACCCCGGAAAAAAATTTTGGGGAA
AAAAAAAAAAAAATTTTTTTTGGGGAAAAAAAAAAAAATAATGGGATGTT
TTTTCCCCCGGGGGGGGGGGGGAGGGGAAAAAAAAAATATTTTTTTTTTT
CTCTCTCACCCCAATAAATATNAAAATAAAAAAAAAAGGGAGGCGGGNNN
NNNTTTTTAANNNNNAAATTNTGATTCNTTTGTNTATTTAACTAAAGTAA
GACNAAATNNTAGCAAAAAGAGAAAAAGGTGGCGTTNNNNGGAGCNTTCT
C
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no382_k20.b1 MSMg01no382_k20.b1 CHROMAT_FILE:
MSMg01no382_k20.b1 PHD_FILE: MSMg01no382_k20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:24:29 2005
         (606 letters)



>mm_chr9_38071128_38072133
          Length = 1006

 Score =  708 bits (366), Expect = 0.0
 Identities = 378/382 (98%), Gaps = 1/382 (0%)
 Strand = Plus / Minus

                                                                        
Query: 224  catggctgcttccttctataaactagccttactttcattgtttggaattaaaggcatgaa 283
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 1006 catggctgcttccttctataaactagccttactttcattgtttggaattaaaggcgtgaa 947

                                                                        
Query: 284  ctaagggtttatctgtataccagttagatcatactgtaattcagagcatatgtactttcc 343
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 946  ctaagggtttatctgtataccagttagatcatactgtaattcagagcatatgtactttcc 887

                                                                        
Query: 344  accctgatcacatagacctagaagttatttagatgtgattccttggcagatgaattgtgt 403
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 886  accctgatcacatagacctagaagttatttagatgtgattccttggcagatgaattgtgt 827

                                                                        
Query: 404  tgctagattaaaattcctcta-aaaagtgattattgggatagtagtatttggtggattag 462
            ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 826  tgctagattaaaattcctctacaaaagtgattattgggatagtagtatttggtggattag 767

                                                                        
Query: 463  taggacaaagatactacaaatggaatattggaaataatctagtcactttaactatggtaa 522
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 766  taggacaaagatactacaaatggaatattggaaataatctagtcactttaactatggtga 707

                                                                        
Query: 523  ggagagtaagaccaatacaagaaaaggaagaggtgagaaaatacaatgaatgatgtttta 582
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 706  ggagagtaagaccaatacaagaaaaggaagaggtgggaaaatacaatgaatgatgtttta 647

                                  
Query: 583  aaaatctataaacaattaaaaa 604
            ||||||||||||||||||||||
Sbjct: 646  aaaatctataaacaattaaaaa 625


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 606
Length of database: 1006
Length adjustment: 10
Effective length of query: 596
Effective length of database: 996
Effective search space:   593616
Effective search space used:   593616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)