BAC Information

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BAC

Clone NameMSMg01-383O23
Chromosome9 (Build37)
Map Location 5,299,776 - 5,300,199
singlet/doubletsinglet
Overlap geneCasp1
Upstream geneAasdhppt, Kbtbd3, LOC664860, 8430410K20Rik, Gria4, EG664889
Downstream geneCasp4, Casp12, LOC547033, LOC100039361, LOC100039372, LOC664957, LOC676037, Pdgfd, Ddi1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-383O23.T7 (MSMg01no383_o23.b1)MSMg01-383O23.TJ (MSMg01no383_o23.g1)
ACCAG487489AG487490
length7581,266
length of high quality
(start - end)
428 (36 - 463)---
definitionCHROMAT_FILE: MSMg01no383_o23.b1 PHD_FILE: MSMg01no383_o23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:26:06 2005CHROMAT_FILE: MSMg01no383_o23.g1 PHD_FILE: MSMg01no383_o23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:26:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATTTC
TTTTGTCTCTCTTCAGCTCCATCAGCTGAAACTTTTGTTGCTACAGAAGA
TTCTAAAGGAGGACATCCTTCATCCTCAGGTACCCATACTGATAGAGGAA
TAATACTCGCTGGATCCTCATCTCTTTTGCATTATTATCTTCATATAATA
CCAAGACTGAAGCAAGTTTGGGGGGTGCTATGAATAACTCATATTTTCCT
CTTATTCTCTGTATATCTTGCTTGAGCAAGGCAGTTCTTGTGTATTTATA
CAAAACTTTCTGAGTCTGTGTCCAAGTCTTATCTCCCTAGTTAGGTATGA
AACCTAATTCAAGTGTCTAGTGCACTTATTCCCATTTTTTCTGGACATTT
TAGCTGAACAACCCCCAAAGATAAACTTGTCATTCTTCCCCATTCTACTT
CTTAGCAGTTTTCTTAGTCAATGCTGTCATCACTGACAGTTGTTCAAATC
TGAAACTCAAAAATGCAGNCTGACTACTTCTTCCTGCTTCTACCTACTTT
CAGNCTGTGGCTAGGNTTTTCTCTCTTCAGTTTTCTATCACCTTATCTAC
CCCACTTATCCAAGACCTAATAGCTGCCCCCCCTGAATCCCTATAGTTAT
CTGTGCCCGCGAAAATTTCTTTGTTCCCAACAAAAAAAGGGGTATCCAAT
GCCCTTTAATTCCCGAATTAAACAATAGGGGGGCCGAAAAATAAAATTGG
AAAGGTCA
ATTATTATAGAGAGTAGAACAGAGACCGGCGGCCGTGCGTCGTAACCACA
TATATACGGATGAAAGCGGTCAGGAAAGGGAGCTACANCGCAAAATACAA
CAGCGACAGGNNCANCACAGCAAACTAGTCAGATGCTTGACCAAGTACAT
GATATAGAGTCTGTGCGCCTATGTACATAGATGATATGCAGCTCCACCTG
TGCTATGTGAGTATGGATGGGTGAGTGATAATATTGAGATATAGTAATTA
GTGAGTGATAGACTATATGCTATCTTATATGTGGTATAGGTTCCGTATAG
AATGACGAAGCGAATGGATGATAGGTGGACGCNGCGGGCGAATTGTGGAC
GCAGGCGAGAACAGTTGTAATACCGTACCATGCCTCGGTTNACGAGTGGC
TTCAGGTCGGTGGGTGTGTGTTAGACGTCAATGCTGGTGGAGACGTNTGC
GTAGTGCAGTAGTGAACCTACCTACTATTGTGATGACGAAGATAGTGGAT
ACAGGTGGAGGTTGTATTGCGTGAGAGGACTTATAGATAATATGACTGTC
GNGTCGTTTTGCTCTCTTGTCGTGTTATATAGCTCTTTCGCATTGGCGCT
AGATTATGAGAGCTCANTAGGTGTGTAGGAGACGTGGAAGAGAGAGCTAT
TAGTTATGTGCATCGAGACGAGTGATCCAGTCTGGCGTCGCGTGTTCGCC
GCTGTCACTATAAGTACGCGCATAGACTGTATACGCATATACGAGTAGCT
TGATGAGNGTGACGCGGGAGAACGCTGATGCGATANGTGTTAATTGTTCG
GGATGAGAGTGTGGGCGCTATGTCTCGCATGATGTGGATCTGAAGAATGT
TGGATGAAGGAGTTGNANAGTGTCATATGATACGATCGATGTCTNTGGAT
ACTCGCGATGAGTAGTACGATCATGCGACGNCTCGTATGTGCGGCTGATA
TATCGCTAGACTGATGTCGTGTCGATGATGTAATGCTTACGACCACTAGA
TATATATCGGAGGTGCGGAGTGTAGCCGAGCACGCGAGCGAGAGGAGCGC
GAGCGTGCTGACTGCTGTCTACGCGACGCATGAGACGTCGCGCGATACGA
TCGAGTGTACGTACGTGTAGTCGNGTACTTGTGTCTGCTCAGGCGCACTA
AGTGATGAGCCGATCACGTCTCTGTGACAGAGCGTGTGAGTGATCATATG
ATGTACNGCGACGTGCGCGCGACACGAGATAGATAGCTGACTATNGTGTA
GATAATANTTGCACAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no383_o23.b1 MSMg01no383_o23.b1 CHROMAT_FILE:
MSMg01no383_o23.b1 PHD_FILE: MSMg01no383_o23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:06 2005
         (428 letters)



>mm_chr9_5299572_5300399
          Length = 828

 Score =  804 bits (416), Expect = 0.0
 Identities = 422/424 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatttcttttgtctctcttcagctccatcagctgaaacttttgttgctacagaag 64
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 205 gaattcatttcttttgtctctcttcagctccatcagctgaaacatttgttgctacagaag 264

                                                                       
Query: 65  attctaaaggaggacatccttcatcctcaggtacccatactgatagaggaataatactcg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 attctaaaggaggacatccttcatcctcaggtacccatactgatagaggaataatactcg 324

                                                                       
Query: 125 ctggatcctcatctcttttgcattattatcttcatataataccaagactgaagcaagttt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctggatcctcatctcttttgcattattatcttcatataataccaagactgaagcaagttt 384

                                                                       
Query: 185 ggggggtgctatgaataactcatattttcctcttattctctgtatatcttgcttgagcaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 385 ggggggtgctatgaataactcatattttcctcttattctctgtatatcttgtttgagcaa 444

                                                                       
Query: 245 ggcagttcttgtgtatttatacaaaactttctgagtctgtgtccaagtcttatctcccta 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ggcagttcttgtgtatttatacaaaactttctgagtctgtgtccaagtcttatctcccta 504

                                                                       
Query: 305 gttaggtatgaaacctaattcaagtgtctagtgcacttattcccattttttctggacatt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gttaggtatgaaacctaattcaagtgtctagtgcacttattcccattttttctggacatt 564

                                                                       
Query: 365 ttagctgaacaacccccaaagataaacttgtcattcttccccattctacttcttagcagt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ttagctgaacaacccccaaagataaacttgtcattcttccccattctacttcttagcagt 624

               
Query: 425 tttc 428
           ||||
Sbjct: 625 tttc 628


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 428
Length of database: 828
Length adjustment: 9
Effective length of query: 419
Effective length of database: 819
Effective search space:   343161
Effective search space used:   343161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)