Query= MSMg01no384_b03.b1 MSMg01no384_b03.b1 CHROMAT_FILE:
MSMg01no384_b03.b1 PHD_FILE: MSMg01no384_b03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:17 2005
(560 letters)
>mm_chr9_30443777_30444731
Length = 955
Score = 1019 bits (527), Expect = 0.0
Identities = 548/557 (98%), Gaps = 5/557 (0%)
Strand = Plus / Minus
Query: 4 ggaattcactgaagcattttcatgggaagagtaagaatcatttctcgctttgcagccagg 63
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 755 ggaattcactgaagcgttttcatgggaagagtaagaatcgtttctcgctttgcagccagg 696
Query: 64 ttcaatcggagttgtcctggaagataagcaaggatgacacacaagaggggaaagtccagt 123
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 695 ttcaatcggagttgtcctggaagataagcaaggatgacacac-agaggggaaagtccagt 637
Query: 124 gtaggctggcctggtctttcctggaatcttgtatttttgggtgggactggagacagatgt 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 gtaggctggcctggtctttcctggaatcttgtatttttgggtgggactggagacagatgt 577
Query: 184 tccatgacagttagacacatacatcagactttatgagaatggtggcaggagaccatccgg 243
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 tccatgac----agacacatacatcagactttatgagaatggtggcaggagaccatccgg 521
Query: 244 gggagcagagtgacttggacttactttcttggaaaggtgatatcattggcaagactcatg 303
|||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 520 gggagcagagtggcttggacttactttcttggaaaggcgatatcattggcaagactcatg 461
Query: 304 tcttgcttcatagatggatagggaggctgactgggcagggagaactgggcttgagccgct 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 tcttgcttcatagatggatagggaggctgactgggcagggagaactgggcttgagccgct 401
Query: 364 ctgtaagtcagatctgagaacattgcctctaggagcgtggttccactttcagcccacact 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 ctgtaagtcagatctgagaacattgcctctaggagcgtggttccactttcagcccacact 341
Query: 424 taccttctttgaggttgcaggctggcccccggatgtttggggatctataattaatctgaa 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 taccttctttgaggttgcaggctggcccccggatgtttggggatctataattaatctgaa 281
Query: 484 acgtgtacaaacggaatcgatttgggtgaaactgtatgaggaaaagtagaaaaggcacaa 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 acgtgtacaaacggaatcgatttgggtgaaactgtatgaggaaaagtagaaaaggcacaa 221
Query: 544 aagggcatgaatgatag 560
|||||||||||||||||
Sbjct: 220 aagggcatgaatgatag 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 955
Length adjustment: 10
Effective length of query: 550
Effective length of database: 945
Effective search space: 519750
Effective search space used: 519750
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no384_b03.g1 MSMg01no384_b03.g1 CHROMAT_FILE:
MSMg01no384_b03.g1 PHD_FILE: MSMg01no384_b03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:17 2005
(461 letters)
>mm_chr9_30315813_30316673
Length = 861
Score = 783 bits (405), Expect = 0.0
Identities = 440/459 (95%), Gaps = 15/459 (3%)
Strand = Plus / Plus
Query: 4 cccctggaactcccattttaaaagctgggcatggtaactctagtgctggtgcatcagggc 63
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 cccc-ggaactcccattttaaaagctgggcatggtaactctagtgctggtgcatcagggc 275
Query: 64 agccaacagagccaaatcaatgagcttcaggcttagtgaaaaacctcatctagagtaaag 123
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 276 agccaacagagccaaatcaatgagtttcaggcttagtgaaaaacctcatctagagtaaag 335
Query: 124 gtagctattagtgaaggaaaaatggcaacctggggcctccacatacacatgcatgcattc 183
|||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 336 gtagctattagtgaagaaaaaatggcaacctggggcctccacatacacatgcaggcattc 395
Query: 184 atgagtccccacatgtacaaacccacaagcacatacaaaacacacacacacacacacaca 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 atgagtccccacatgtacaaacccacaagcacatacaaaacacacacacacacacacaca 455
Query: 244 cacacacacacagacagtgggggagtggtgtggagacactctagtcctcacctcatacaa 303
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 ------------gacagtgggggagtggtgtggagacactctagtcctcacctcatacaa 503
Query: 304 acaagggctttctgtgttctaacagggtgggttagaaaagtaaaacacattaatgctaaa 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 acaagggctttctgtgttctaacagggtgggttagaaaagtaaaacacattaatgctaaa 563
Query: 364 taattgtggttaagaaatacacaacctaat-aggggaagaggaaagtcccatctttcaca 422
|||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||
Sbjct: 564 taattgtggttaagaaatacacaacc-aattaggggaaaaggaaagtcccatctttcaca 622
Query: 423 cagtgcataactcctaggagtttatacttctatcatttc 461
|||||||||||||||||||||||||||||||||||||||
Sbjct: 623 cagtgcataactcctaggagtttatacttctatcatttc 661
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 461
Length of database: 861
Length adjustment: 10
Effective length of query: 451
Effective length of database: 851
Effective search space: 383801
Effective search space used: 383801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
