Query= MSMg01no384_k05.b1 MSMg01no384_k05.b1 CHROMAT_FILE:
MSMg01no384_k05.b1 PHD_FILE: MSMg01no384_k05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:58 2005
(494 letters)
>mm_chr9_123187333_123188226
Length = 894
Score = 866 bits (448), Expect = 0.0
Identities = 480/492 (97%), Gaps = 4/492 (0%)
Strand = Plus / Plus
Query: 5 gaattcagaatattc--aggcaggttgagcaggtgcctctgtgtgtgggccaggaaagca 62
|||||||||| | | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagaaaa--caaaggcaggttgagcaggtgcctctgtgtgtgggccaggaaagca 262
Query: 63 catgcagagatacattctctttaataaaatgtatcaaatatagaatgtattgctacccct 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 catgcagagatacattctctttaataaaatgtatcaaatatagaatgtattgctacccct 322
Query: 123 ttagcaccagctgccatgctgtggcaacctggagtcacctggcactctctttccatccag 182
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ttagcactggctgccatgctgtggcaacctggagtcacctggcactctctttccatccag 382
Query: 183 tgcagagggacgcacgatttttctacagaatattttgattaaagcaatgttgaagcatgt 242
||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 383 tgcagagggacacacgatttttctacagaatattttggttaaagcaatgttgaagcatgt 442
Query: 243 tagtctgttttctgttgctatagtgaagtatcccagactaagccattatttgactcatga 302
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tagtctgttttctgttgctgtagtgaagtatcccagactaagccattatttgactcatga 502
Query: 303 ttctggaagcctggaagtttaagaacataactgagctctctgccctgtataggtgagggc 362
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 ttctggaagcctggaagtctaagaacataactgagctctctgccctgtataggtgagggc 562
Query: 363 tctttctataacagagcatcagagggcactactctctgggaccagaaaacatgacagcta 422
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 563 tctttctataacagagcatcagagggcacaactctctgggaccagaaaacatgacagcta 622
Query: 423 agctctattttcttataaagtcactaaaaccattttgagggccctgctctcatatctaac 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 agctctattttcttataaagtcactaaaaccattttgagggccctgctctcatatctaac 682
Query: 483 tcttttttgttt 494
||||||||||||
Sbjct: 683 tcttttttgttt 694
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 494
Length of database: 894
Length adjustment: 10
Effective length of query: 484
Effective length of database: 884
Effective search space: 427856
Effective search space used: 427856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no384_k05.g1 MSMg01no384_k05.g1 CHROMAT_FILE:
MSMg01no384_k05.g1 PHD_FILE: MSMg01no384_k05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:59 2005
(381 letters)
>mm_chr9_123346286_123347066
Length = 781
Score = 683 bits (353), Expect = 0.0
Identities = 374/381 (98%)
Strand = Plus / Minus
Query: 1 ctcagggcaggaactgtcagagaagttcctagggaatcctgtgtgccaccagagaggggt 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 ctcagggcgggaactgtcagagaagttcctagggaatcctgtgtgccaccagagaggggt 522
Query: 61 gccaatctccacagtggttctctaaagtaaagccaggtctttatgtggatagcatcttac 120
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 521 gccaatctccacagtggttctctaaaggaaagccaggtctttatgtggatagcatcttac 462
Query: 121 ttctgacgatggaagtaactggaagataaggcaccttctttttcttgcccaacttgggga 180
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 ttctgacgatggaagtaattggaagataaggcaccttctttttcttgcccaacttgggga 402
Query: 181 acacggagaagaacagagacccagaagcaattacatctgagtgacactcattatgctcac 240
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct: 401 acacggagaagaacagagacccggaagcaattacatctgagtgacactcattgtgctcac 342
Query: 241 ttccactactgtcgccttgggcttgaaggcaactatgtgttaccactgataccaagccct 300
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 ttccactactgtcgcctcgggcttgaaggcaactatgtgttaccactgataccaagccct 282
Query: 301 ggatggtcgggaagaggtgctggggcagatgaagggggcatgaggtccttcactgggttg 360
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 ggatggtcaggaagaggtgctggggcagatgaagggggcatgaggtccttcactgggttg 222
Query: 361 aggtcccttcattgggttggg 381
|||||||||||||||||||||
Sbjct: 221 aggtcccttcattgggttggg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 381
Length of database: 781
Length adjustment: 9
Effective length of query: 372
Effective length of database: 772
Effective search space: 287184
Effective search space used: 287184
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
