BAC Information

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BAC

Clone NameMSMg01-384M06
Chromosome9 (Build37)
Map Location 77,382,309 - 77,571,005
singlet/doubletdoublet
Overlap geneLrrc1, Klhl31
Upstream geneC530008M07Rik, Tinag, LOC436082, 2310046A06Rik, 5730403I07Rik
Downstream geneGclc, LOC100042212, Elovl5, Gcm1, LOC666353, Fbxo9, Ick, C920006O11Rik, Gsta4, LOC100041074, Gsta1, LOC666367, LOC100042295, LOC666373, LOC100042314, Omt2a, EG666383, Omt2b, Gsta2, Dppa5, 2410146L05Rik, LOC666408, LOC100042356, LOC666419, E330016A19Rik, Mto1, Eef1a1, Slc17a5, Cd109
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-384M06.T7 (MSMg01no384_m06.b1)MSMg01-384M06.TJ (MSMg01no384_m06.g1)
ACCAG488125AG488126
length750730
length of high quality
(start - end)		513 (36 - 548)587 (65 - 651)
definitionCHROMAT_FILE: MSMg01no384_m06.b1 PHD_FILE: MSMg01no384_m06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:27:08 2005CHROMAT_FILE: MSMg01no384_m06.g1 PHD_FILE: MSMg01no384_m06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:27:08 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,570,692 - 77,571,005)(77,382,309 - 77,382,895)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAACC
TCTTGGACTCTGCTGTTTCGATAGATAGCCAAAAGGAGGGACCCAATCAT
CTCTCTGTCACTTTCTCTCTCTCTCTCAAGATGTACTGCTTATATTGGAT
TAATTCTGATGGGAAGACTCACCATAAACATTGTCAATACCATACAATGG
GCTGTATGCCCTGTACTGAATAAATAATAAGGACCTGAGCTAAGCACGAA
TATTCATCAGTCTCTGCTTTCTTAGTGTGGATGTAGCGTGCCCAGCTGCC
TTCTGCTCACCAAGCTAGCCTTCCCTACCATTATGGAAGATACTGTGTAT
CTTTGAACTACAAACCAAATTAAGCCTCTCCCTTACTTGCTTCTTGCTAG
GTATTTTGTTAGAGCAATAAGAAAAGTAACTAGTGAAATAAGCAGATCTT
TTCTCAGACTTCCCTTAGGGAAACCACAGCTAAGCTCAGGAAAGAGAGTA
GCAAGAATGGGGGAGGATCTGCTAGATGGTCCAAGCTCATCTCTGGCTTG
GTGGTTACTGCGGTAGTGAATGGAAATAGAGAAAATAAAGTATCACTTAA
ATACCAGAGTAAGCCGAAGATAGGTTTGCTTTTGTGCTTGCCATTTTAAA
AAAAGCGTAAGGCGTTATTTAATAAAAAATTTAAAAAATAACCTCGGATT
TTCTGGTCCGGTTATAGTTCCCTTAAAAATTGTTAATCAACGCCATCCCC


XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCTGACCCAGGAATGGACGCCACTCATCTCTGAGAGG
TTAGGCATGAATGAGCTCGTTAATACTCGGTGACCTGATTCTGAAAATGA
TCGCTCAGCTCAGTGCTCTTTTTCTTAATGATGCAAAAATAGCCCAAACA
TCATGAGTCTCTTTGTTGCCCTTTATAGAACAGATGGGACTCCTGGCTCC
ACAGGGGCTTCTGATGCCTTTGACCTTGAGGCAGGAAGATGCAGTAGTCA
AAAGACCCAACTCTTGAGAGACCCTATGTCTTCAAATGCCAGCTTTGATA
TTTAATAGCTGGGTGTCAAGTTGTTGGGGGTGGGGAGCCGTCTTTGTGTC
CCCAGTGTTCTCATCTGTAAGGAAAAGCTACTTATGTGAAATGGGGACGA
GGCTGTATGCACATGGAACACGTTAATCACAGGAAGAGCCTAAATAGACT
GAGGTACAGGACCCAGAACACACTCAGTGTCTTTGTAATTCTCTCACCGG
CTCCCCCTCCTTAATTCTAGCTCTCTTTAAATTCCCACCATGACTCACAC
TTGTCTGGGTCCTATACGGCTAAATCCACTTATCTGGTCCTCTGCAAATC
GGCAAGATCTCACACTTAACCATGTGCCATAGACCAACTTGTTGACAGAC
TAGTGAACCTGTCACTTCCGTTTCCCCTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no384_m06.b1 MSMg01no384_m06.b1 CHROMAT_FILE:
MSMg01no384_m06.b1 PHD_FILE: MSMg01no384_m06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:27:08 2005
         (513 letters)



>mm_chr9_77570093_77571005
          Length = 913

 Score =  607 bits (314), Expect = e-178
 Identities = 314/314 (100%)
 Strand = Plus / Minus

                                                                       
Query: 200 ctgagctaagcacgaatattcatcagtctctgctttcttagtgtggatgtagcgtgccca 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 913 ctgagctaagcacgaatattcatcagtctctgctttcttagtgtggatgtagcgtgccca 854

                                                                       
Query: 260 gctgccttctgctcaccaagctagccttccctaccattatggaagatactgtgtatcttt 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 853 gctgccttctgctcaccaagctagccttccctaccattatggaagatactgtgtatcttt 794

                                                                       
Query: 320 gaactacaaaccaaattaagcctctcccttacttgcttcttgctaggtattttgttagag 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793 gaactacaaaccaaattaagcctctcccttacttgcttcttgctaggtattttgttagag 734

                                                                       
Query: 380 caataagaaaagtaactagtgaaataagcagatcttttctcagacttcccttagggaaac 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 caataagaaaagtaactagtgaaataagcagatcttttctcagacttcccttagggaaac 674

                                                                       
Query: 440 cacagctaagctcaggaaagagagtagcaagaatgggggaggatctgctagatggtccaa 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 cacagctaagctcaggaaagagagtagcaagaatgggggaggatctgctagatggtccaa 614

                         
Query: 500 gctcatctctggct 513
           ||||||||||||||
Sbjct: 613 gctcatctctggct 600


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 913
Length adjustment: 10
Effective length of query: 503
Effective length of database: 903
Effective search space:   454209
Effective search space used:   454209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no384_m06.g1 MSMg01no384_m06.g1 CHROMAT_FILE:
MSMg01no384_m06.g1 PHD_FILE: MSMg01no384_m06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:27:08 2005
         (587 letters)



>mm_chr9_77382109_77383095
          Length = 987

 Score = 1089 bits (563), Expect = 0.0
 Identities = 581/587 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgacccaggaatggacgccactcatctctgagaggttaggcatgaatgagctcgttaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgacccaggaatggacgccactcatctctgagaggttaggcatgaatgagctcgttaat 260

                                                                       
Query: 61  actcggtgacctgattctgaaaatgatcgctcagctcagtgctctttttcttaatgatgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actcggtgacctgattctgaaaatgatcgctcagctcagtgctctttttcttaatgatgc 320

                                                                       
Query: 121 aaaaatagcccaaacatcatgagtctctttgttgccctttatagaacagatgggactcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaaatagcccaaacatcatgagtctctttgttgccctttatagaacagatgggactcct 380

                                                                       
Query: 181 ggctccacaggggcttctgatgcctttgaccttgaggcaggaagatgcagtagtcaaaag 240
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggctccgcaggggcttctgatgcctttgaccttgaggcaggaagatgcagtagtcaaaag 440

                                                                       
Query: 241 acccaactcttgagagaccctatgtcttcaaatgccagctttgatatttaatagctgggt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acccaactcttgagagaccctatgtcttcaaatgccagctttgatatttaatagctgggt 500

                                                                       
Query: 301 gtcaagttgttgggggtggggagccgtctttgtgtccccagtgttctcatctgtaaggaa 360
           ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtcaagttgttgggggtggggggtcgtctttgtgtccccagtgttctcatctgtaaggaa 560

                                                                       
Query: 361 aagctacttatgtgaaatggggacgaggctgtatgcacatggaacacgttaatcacagga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aagctacttatgtgaaatggggacgaggctgtatgcacatggaacacgttaatcacagga 620

                                                                       
Query: 421 agagcctaaatagactgaggtacaggacccagaacacactcagtgtctttgtaattctct 480
           |||||||||||||||||||| |||||||||||||||||||| |||||||||||| |||||
Sbjct: 621 agagcctaaatagactgaggcacaggacccagaacacactcggtgtctttgtaaatctct 680

                                                                       
Query: 481 caccggctccccctccttaattctagctctctttaaattcccaccatgactcacacttgt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 caccggctccccctccttaattctagctctctttaaattcccaccatgactcacacttgt 740

                                                          
Query: 541 ctgggtcctatacggctaaatccacttatctggtcctctgcaaatcg 587
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ctgggtcctatacggctaaatccacttatctggtcctctgcaaatcg 787


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 987
Length adjustment: 10
Effective length of query: 577
Effective length of database: 977
Effective search space:   563729
Effective search space used:   563729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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