BAC Information

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BAC

Clone NameMSMg01-384M18
Chromosome9 (Build37)
Map Location 71,776,196 - 71,993,783
singlet/doubletdoublet
Overlap geneTcf12, EG666001, LOC665959
Upstream geneLipc, LOC100041628, Aqp9, 1700020I22Rik, LOC100041660, Aldh1a2, Grinl1a, AA407270, LOC547043, LOC100040537, Cgnl1
Downstream geneEG665964, LOC665970, Suhw4, LOC100041760, Mns1, LOC666007, Tex9, 4930509E16Rik, Rfxdc2, Nedd4, EG639396, Prtg, LOC100040694, Pygo1, Dyx1c1, EG546143, Ccpg1, LOC100041896, Pigb, Rab27a, 2410004A20Rik, BC003885
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-384M18.T7 (MSMg01no384_m18.b1)MSMg01-384M18.TJ (MSMg01no384_m18.g1)
ACCAG488149AG488150
length763743
length of high quality
(start - end)		511 (47 - 557)420 (61 - 480)
definitionCHROMAT_FILE: MSMg01no384_m18.b1 PHD_FILE: MSMg01no384_m18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:27:10 2005CHROMAT_FILE: MSMg01no384_m18.g1 PHD_FILE: MSMg01no384_m18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:27:10 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,776,196 - 71,776,706)(71,993,364 - 71,993,783)
sequence
GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTT
GGGTTGTAATTCTCAATGGCTTAAAGTAAGACTAGATGAAGAGAGAAGAG
ACAAGAGTAGCAAACCCCTGGAGGGAGAGGTGACAATGAAAGAGTCTGAA
TCTAAAGGATATGACAGACTCAAGATATATTAGCTCAAATCAAGAATAGA
AAACACATCACATGTTCTCCTAGTATTCAGCAGGAGTACATGCACAGTGT
GCACACAATGAAAAGTGAAACGTTTACCAATGAATCTTGACAAATATGTA
ACACGCAGTGTACGCTTATCTACCTTTTGTTTGTGTCTCTACTTTTTCAA
AATTAAAGCTTTGAGAAGATAATAAACACCACCAAAGACTCACTAGGAGC
ATTTCCAATGTACAACTCATTAAATTTTCCAGCATCTTATGTAGGTCAGG
TGAGAACGCCTCTTCCTTTGTACAAGATTCCCAACATGAAGGACTCTCAC
TGACATATACAAAGAGATTAACTTGAAAACAAATCTAAGTAATTCCTAAA
TGACTCTGTGGACTAAATCCTAAAGCTGAATTATCTATGGAGGACAAACT
ATGAGACTGCAAATGTACACAGACTATATTGTGAAAGACAGGAAAACTTC
TTACAGGGACAAAAATTCCTTGCTACTAACAAAGGTGGGAAGAATTTTTC
CTCTCTAATAGAAAAACTGGGCCGGAAATGCCTATCCTCTTGTTTCCCAC
GGATACTGAAGCG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTCAGACTCACATGCTCATTTCACCCTGGCCTCCAAAATCT
GGCTCATGCCACTACACACAGCTAGACTGGGTCATTCCTCATCTGCAAGC
CCTTCACTGAACTCAAGGCCTGGGACATGCTAAGCAAGTGCTTTGCCATT
GAGCTACCCCTCACCCCTCTGGAATTGCTAGAAGACCAGTGACATTCATA
GATGAAACTTCAAGATAGAATGGGAATCAAACAGGAGCATTGTAAATTCT
ACTTTTAAAACCTTTTTTTATTTACATTGGCGTTCAGCCTCCATGTATGT
CTGTGTGAGGTTGTCAGAACCCCTGGAACGGGAGTTATAGAGAGTTGTAA
GCTGCCATGTGGGTGTTGGGATTTGAACCTAGGACCTTTAGAAGTGGAGG
TGGTCCTCTTAACTGCTGAGTCATCTCTCCAGCCCTGTAAATCCTACTTT
TTAAATGGTATTTTCGAGGAATAATCTAAGAACTGAAGATCACAGTGTCT
GACGCTCACACTCTGTGAAAACATACCCATTATTCTGAAAGGTACTGTGT
TGGTTATCAACGCGTTCAACTCTGTGCTCACTCTCCAGTACTTGCTCTGC
AGCATCCTTCTTATTCGATCGATCGATTGGCAGTGTTATGATCCTGTCCA
TAAAGTGCTATAAAGCTCGTCAACGCAGTTGATGGTTCCTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no384_m18.b1 MSMg01no384_m18.b1 CHROMAT_FILE:
MSMg01no384_m18.b1 PHD_FILE: MSMg01no384_m18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:27:10 2005
         (511 letters)



>mm_chr9_71775996_71776906
          Length = 911

 Score =  973 bits (503), Expect = 0.0
 Identities = 509/511 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgttgggttgtaattctcaatggcttaaagtaagactagatgaagagagaagagacaaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgttgggttgtaattctcaatggcttaaagtaagactagatgaagagagaagagacaaga 260

                                                                       
Query: 61  gtagcaaacccctggagggagaggtgacaatgaaagagtctgaatctaaaggatatgaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtagcaaacccctggagggagaggtgacaatgaaagagtctgaatctaaaggatatgaca 320

                                                                       
Query: 121 gactcaagatatattagctcaaatcaagaatagaaaacacatcacatgttctcctagtat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gactcaagatatattagctcaaatcaagaatagaaaacacatcacatgttctcctagtat 380

                                                                       
Query: 181 tcagcaggagtacatgcacagtgtgcacacaatgaaaagtgaaacgtttaccaatgaatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcagcaggagtacatgcacagtgtgcacacaatgaaaagtgaaacgtttaccaatgaatc 440

                                                                       
Query: 241 ttgacaaatatgtaacacgcagtgtacgcttatctaccttttgtttgtgtctctactttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttgacaaatatgtaacacgcagtgtacgcttatctaccttttgtttgtgtctctactttt 500

                                                                       
Query: 301 tcaaaattaaagctttgagaagataataaacaccaccaaagactcactaggagcatttcc 360
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcaaaattaaagccttgagaagataataaacaccaccaaagactcactaggagcatttcc 560

                                                                       
Query: 361 aatgtacaactcattaaattttccagcatcttatgtaggtcaggtgagaacgcctcttcc 420
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aatgtacatctcattaaattttccagcatcttatgtaggtcaggtgagaacgcctcttcc 620

                                                                       
Query: 421 tttgtacaagattcccaacatgaaggactctcactgacatatacaaagagattaacttga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttgtacaagattcccaacatgaaggactctcactgacatatacaaagagattaacttga 680

                                          
Query: 481 aaacaaatctaagtaattcctaaatgactct 511
           |||||||||||||||||||||||||||||||
Sbjct: 681 aaacaaatctaagtaattcctaaatgactct 711


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 911
Length adjustment: 10
Effective length of query: 501
Effective length of database: 901
Effective search space:   451401
Effective search space used:   451401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no384_m18.g1 MSMg01no384_m18.g1 CHROMAT_FILE:
MSMg01no384_m18.g1 PHD_FILE: MSMg01no384_m18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:27:10 2005
         (420 letters)



>mm_chr9_71993130_71993949
          Length = 820

 Score =  797 bits (412), Expect = 0.0
 Identities = 418/420 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcagactcacatgctcatttcaccctggcctccaaaatctggctcatgccactacacaca 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 654 tcagactcacatgctcatttcaccctggcctccaaaatctggctcatgccactatacaca 595

                                                                       
Query: 61  gctagactgggtcattcctcatctgcaagcccttcactgaactcaaggcctgggacatgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 gctagactgggtcattcctcatctgcaagcccttcactgaactcaaggcctgggacatgc 535

                                                                       
Query: 121 taagcaagtgctttgccattgagctacccctcacccctctggaattgctagaagaccagt 180
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 534 taagcaagtgctttgccattgagctacccctcacccccctggaattgctagaagaccagt 475

                                                                       
Query: 181 gacattcatagatgaaacttcaagatagaatgggaatcaaacaggagcattgtaaattct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 gacattcatagatgaaacttcaagatagaatgggaatcaaacaggagcattgtaaattct 415

                                                                       
Query: 241 acttttaaaacctttttttatttacattggcgttcagcctccatgtatgtctgtgtgagg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 acttttaaaacctttttttatttacattggcgttcagcctccatgtatgtctgtgtgagg 355

                                                                       
Query: 301 ttgtcagaacccctggaacgggagttatagagagttgtaagctgccatgtgggtgttggg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 ttgtcagaacccctggaacgggagttatagagagttgtaagctgccatgtgggtgttggg 295

                                                                       
Query: 361 atttgaacctaggacctttagaagtggaggtggtcctcttaactgctgagtcatctctcc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 atttgaacctaggacctttagaagtggaggtggtcctcttaactgctgagtcatctctcc 235


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 420
Length of database: 820
Length adjustment: 9
Effective length of query: 411
Effective length of database: 811
Effective search space:   333321
Effective search space used:   333321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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