Query= MSMg01no385_j01.b1 MSMg01no385_j01.b1 CHROMAT_FILE:
MSMg01no385_j01.b1 PHD_FILE: MSMg01no385_j01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:28:10 2005
(542 letters)
>mm_chr9_22612549_22613491
Length = 943
Score = 946 bits (489), Expect = 0.0
Identities = 528/547 (96%), Gaps = 11/547 (2%)
Strand = Plus / Minus
Query: 7 gaattctctggtcactatctgccaccttaccatcgcactgcttgcattgcagaggcatgc 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 gaattctctggtcactatctgccaccttaccatcgcactgcttgcattgcagaggcatgc 580
Query: 67 taccaggttggtcatgtttatgagtcctgagattcatttgtatttattcttaaaaatatg 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 taccaggttggtcatgtttatgagtcctgagattcatttgtatttattcttaaaaatatg 520
Query: 127 catgattaaatggtacatgaaatttagtactgtgaaatt-aaaaaatgaaagagactcag 185
||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||
Sbjct: 519 tatgattaaatggtacatgatattaagtactgtgaaattaaaaaaatgaaagagactcag 460
Query: 186 atatagctcctacctgtaagtaccttgcattatcaataacagaaaaatataaaactataa 245
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 459 atatagctcctacctgtaagtaccttgcattatcaataacagaaaaatatgaaactataa 400
Query: 246 tgatgtagaaaaaaacatatatttagagagtggtagatttaaagatttcagcaggattta 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 tgatgtagaaaaaaacatatatttagagagtggtagatttaaagatttcagcaggattta 340
Query: 306 ttttatcctctagtccttgtcctagaaccaaaatcctcaagtaagttattcaagatagga 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 ttttatcctctagtccttgtcctagaaccaaaatcctcaagtaagttattcaagatagga 280
Query: 366 agggctttcttctgaccaccacgtttgcaacattgtatacgcgcatgtgtataaacacac 425
|||||||||||||||||||||| |||||||||||||||| |||||||||| |||||||||
Sbjct: 279 agggctttcttctgaccaccacatttgcaacattgtatatgcgcatgtgtgtaaacacac 220
Query: 426 acatacacacaca----------tcacaaatattatttataaaaatttttaagactcata 475
||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 219 acatacacacacacacacacacatcacaaatattatttataaaaatttttaagactcata 160
Query: 476 tggtgtcttgttagttaccaaaacttttcctgtatgtacagaaaaacaagggaagattat 535
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 159 tggtgtcttgttagttaccaaaacttttcctgtatgtacagaaaagcaagggaagattat 100
Query: 536 gaaccta 542
|||||||
Sbjct: 99 gaaccta 93
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 943
Length adjustment: 10
Effective length of query: 532
Effective length of database: 933
Effective search space: 496356
Effective search space used: 496356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no385_j01.g1 MSMg01no385_j01.g1 CHROMAT_FILE:
MSMg01no385_j01.g1 PHD_FILE: MSMg01no385_j01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:28:10 2005
(475 letters)
>mm_chr9_22432736_22433610
Length = 875
Score = 768 bits (397), Expect = 0.0
Identities = 442/475 (93%), Gaps = 28/475 (5%)
Strand = Plus / Plus
Query: 1 ttctcagtttccaaatcactttgctgtgactgtcctgaccttggggtcacaccatggctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 229 ttctcagtttccaaatcactttgctgtgactgtcctgaccttggggtcacaccatggctt 288
Query: 61 gcccgaccttggggtcacaccatggctttcctggccttggggccatgcttcattcctggt 120
||||||||||||||||||||||||||||||||
Sbjct: 289 ----------------------------tcctggccttggggccatgcttcattcctggt 320
Query: 121 ctcccaatagaaacctagttttatgttttgctccattgttttcagtggaattcacatgcc 180
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 321 ctcccaatagaaacctagttttatgttttgctccattgttttcagtggaactcacatgcc 380
Query: 181 tgatatgaatttaagatctgaatgtactatgtaattttattcctatggtggccagtataa 240
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 381 tgatatgaatttaagatctgaatgtactatgtaattttattcctatggtgaccagtataa 440
Query: 241 ttaatatattttaatgtttatccccctcctataatatgccttaacactgtgtgtgcatgc 300
||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct: 441 ttaatatattttaatgtttattcccctcctataatatgtcttaacactgtgtgtgcatgc 500
Query: 301 ataaatatagatgatgtttaaaacattataattgagtctttgaaataaacctatttttat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ataaatatagatgatgtttaaaacattataattgagtctttgaaataaacctatttttat 560
Query: 361 acttatttttaaattatggtatgttaagtaagaatgtcatttgtaagactggaagtttaa 420
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 561 acttatttttaaattatggtatgctaagtaagaatgtcatttgtaagactggaagtttaa 620
Query: 421 ccacgcctcctattctcttatatctaacagtgatttgaagggagtgatagtgact 475
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ccacgcctcctattctcttatatctaacagtgatttgaagggagtgatagtgact 675
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 475
Length of database: 875
Length adjustment: 10
Effective length of query: 465
Effective length of database: 865
Effective search space: 402225
Effective search space used: 402225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
