BAC Information

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BAC

Clone NameMSMg01-386A15
Chromosome9 (Build37)
Map Location 108,827,028 - 108,827,698
singlet/doubletsinglet
Overlap genenone
Upstream gene4921517D21Rik, Camkv, Traip, Ube1l, D330022A01Rik, 6230427J02Rik, 1700021K14Rik, Ihpk1, Gmppb, Rnf123, Amigo3, Mst1, Apeh, Bsn, LOC100042108, Dag1, Nicn1, EG434437, Tcta, Rhoa, Gpx1, Usp4, LOC623859, 1700102P08Rik, Ccdc36, BC048562, Klhdc8b, LOC100042228, Ccdc71, Lamb2, Usp19, Qars, Qrich1, Impdh2, 4733401H18Rik, Dalrd3, Wdr6, 4933406E20Rik, Arih2, ENSMUSG00000074075, Slc25a20, Prkar2a, Ihpk2, Nckipsd, Celsr3, Slc26a6, LOC100038959, Tmem89
Downstream geneUqcrc1, Col7a1, Pfkfb4, Scotin, Trex1, 6620401K05Rik, Ccdc72, Ccdc51, EG665413, Plxnb1, E330009P21Rik, Fbxw13, Fbxw12, Fbxw14, LOC668758, EG382156, Fbxw16, Fbxw19, LOC635668, Fbxw15, EG382106, E330001B16Rik, C85627, EG382109, 1700124P09Rik, Spink8, 3000002C10Rik, Nme6, Camp, Cdc25a, LOC100043782
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-386A15.T7 (MSMg01no386_a15.b1)MSMg01-386A15.TJ (MSMg01no386_a15.g1)
ACCAG489099AG489100
length753756
length of high quality
(start - end)		666 (73 - 738)633 (43 - 675)
definitionCHROMAT_FILE: MSMg01no386_a15.b1 PHD_FILE: MSMg01no386_a15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:28:46 2005CHROMAT_FILE: MSMg01no386_a15.g1 PHD_FILE: MSMg01no386_a15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:28:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCTGAGCATCCGCGGA
ATTCCCGCCATTTACGCATACCAGCATTCAGGTGTGTGGGACGCATACTC
TGTAGCAGGGTCCTTGCTTAGAGTAGGAGCTTGCCCTAAGTTTGGCTACT
CGGCACTGTATCCCAAAATAGGATGGAAAGGTTTTTTGTGTGTGTGATAT
ATATGTATTGTATGTGTATGTACATTTATACACATATGTATATATGTGTG
TTTATGTATGAATATGTACAATATATGTATGTATGTGTATATATATTCAC
ATGTATGCCATACATAACTATATATGCATTATTGTTTGTTTTGAGATAGA
GTCTCACTGTGTAGCCTTGGCTGGCCTGGAATTTGTTTTTAGACCAGGCT
GGCTTTGAACTCCCACACATTCAACTTTCTCTACCTTCTGAGTGCTAAGA
TTGAAGATGTTCCCTGCCATGCCTGGACCTGTTGCGCATATTTTACGATA
CAAGGCCTTACTATGGAGTTCAGGCTAGCTTTAAACCCACAACTGTACTG
CCACTGCCTCCACAGTGCCAAACTTAAACACATGCACCATTACGATGTCT
ATCTAGAATCAAGGTTTTTTTTCATTAGTATTATTTTTATGAGACCCTAG
GATTCCCCTTGAACTCACTGTTTGACTGANAATGACCGTGAACTTCTGCT
TTTCCTTCCTCCCCCTTTCAAGTGCCTGGATTATAGGTGAGTGCCACCAC
TGT

GTGGGAGGCCTGGCGGCCGCCTGGTTCAGCACTATGAGGTGAACTATAGA
AGGTCTCGCGAAATTCACTGTGTAGACCAAGCTGGCCTTGAACTTCCAGT
GATCCTCCCACCCTGGCCTCCCAGGTACTCAGATTACAGGTGGGCACCAC
CGTGCCTAGCAAGGACAGAAAACTTTTTACAAGTTAATGAGCTGAGCAGT
GCTTGTGCCTTTGATCTCAGCACTGAGGAGGCAGAGGCAGGTAGATATGT
GAGTTTGAGGCCAGGCTGGTTTATGTGGCAAGTTCCAGGACAGCCAGGGC
TACACAGAGAAACCCTGTCTCAAAAAACAGAAACAAACAAAAATTAATGT
TTTGCCTTCATGTGTGTGCATCATGTATGTGCCCAGTGTCCACAGAGGCC
CAAAGAGCATATTGGATCTCCTGGGCTTGGAGTGGTACATAGTTGTGAAC
TATCACATAGTAGAACTATCACACGTAGATGTGCATCATATGTGCGATGG
GAATAAAACATGGATCCTTTGTAAGAATATCCAGTGCTCTTAACTGCTGA
GCAGGAAACAGATCCAGCTAGGCCTGGTGGCATGGAGCTGTAATCTCAGC
ATTTGAGAGGCTGAAGCAGGAAGATTACTGTAAAAGCCAGCAGAGACCCT
TTCTTGAAAAGTCTACATATAGATTTAAGAATTTGTATAGACTTGTAATC
ACGTACATTCGTAGCACGTGAGAGTATGTATACAGGAGTCAAGTGCCCAC
AGAGGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no386_a15.b1 MSMg01no386_a15.b1 CHROMAT_FILE:
MSMg01no386_a15.b1 PHD_FILE: MSMg01no386_a15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:28:46 2005
         (666 letters)



>mm_chr9_108826828_108827893
          Length = 1066

 Score = 1212 bits (627), Expect = 0.0
 Identities = 658/672 (97%), Gaps = 7/672 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   agcattcaggtgtgtgggacgcatactctgtagcagggtccttgcttagagtaggagctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agcattcaggtgtgtgggacgcatactctgtagcagggtccttgcttagagtaggagctt 260

                                                                       
Query: 61  gccctaagtttggctactcggcactgtatcccaaaataggatggaaaggttttttgtgtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gccctaagtttggctactcggcactgtatcccaaaataggatggaaaggttttttgtgtg 320

                                                                       
Query: 121 tgtgatatatatgtattgtatgtgtatgtacatttatacacatatgtatatatgtgtgtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtgatatatatgtattgtatgtgtatgtacatttatacacatatgtatatatgtgtgtt 380

                                                                       
Query: 181 tatgtatgaatatgtacaatatatgtatgtatgtgtatatatattcacatgtatgccata 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 381 tatgtatgaatatgtacaatatatgtatgtatgtgtatatatattcacatgtatgc-ata 439

                                                                       
Query: 241 cataactatatatgcattattgtttgttttgagatagagtctcactgtgtagccttggct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 cataactatatatgcattattgtttgttttgagatagagtctcactgtgtagccttggct 499

                                                                       
Query: 301 ggcctggaatttgtttttagaccaggctggctttgaactcccacacattcaactttctct 360
           ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct: 500 ggcctggaatttgtttttagaccaggctggctttgaactcccagagattcaactttctct 559

                                                                       
Query: 361 accttctgagtgctaagattgaagatgttccctgccatgcctggacctgttgcgcatatt 420
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 560 accttctgagtgctaagattgaagatgctccctgccatgcctggacctgttgcgcatatt 619

                                                                       
Query: 421 ttacgatacaaggccttactatggagttcaggctagctttaaacccacaactgtactgcc 480
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ttatgatacaaggccttactatggagttcaggctagctttaaacccacaactgtactgcc 679

                                                                       
Query: 481 actgcctccacagtgccaaacttaaacacatgcaccattacgatgtctatctagaatcaa 540
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 actgcctccacagtgccagacttaaacacatgcaccattacgatgtctatctagaatcaa 739

                                                                       
Query: 541 ggtttttttt------cattagtattatttttatgagaccctaggattccccttgaactc 594
           ||||||||||      ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 ggttttttttttttttcattagtattatttttatgagaccctaggattccccttgaactc 799

                                                                       
Query: 595 actgtttgactganaatgaccgtgaacttctgcttttccttcctccccctttcaagtgcc 654
           ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 actgtttgaatgaaaatgaccgtgaacttctgcttttccttcctccccctttcaagtgcc 859

                       
Query: 655 tggattataggt 666
           ||||||||||||
Sbjct: 860 tggattataggt 871


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1066
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1056
Effective search space:   692736
Effective search space used:   692736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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