BAC Information

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BAC

Clone NameMSMg01-386A22
Chromosome9 (Build37)
Map Location 77,170,554 - 77,171,240
singlet/doubletsinglet
Overlap gene2310046A06Rik
Upstream geneHcrtr2, C530008M07Rik, Tinag, LOC436082
Downstream gene5730403I07Rik, Lrrc1, Klhl31, Gclc, LOC100042212, Elovl5, Gcm1, LOC666353, Fbxo9, Ick, C920006O11Rik, Gsta4, LOC100041074, Gsta1, LOC666367, LOC100042295, LOC666373, LOC100042314, Omt2a, EG666383
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-386A22.T7 (MSMg01no386_a22.b1)MSMg01-386A22.TJ (MSMg01no386_a22.g1)
ACCAG489113AG489114
length879758
length of high quality
(start - end)		114 (75 - 188)687 (66 - 752)
definitionCHROMAT_FILE: MSMg01no386_a22.b1 PHD_FILE: MSMg01no386_a22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:28:47 2005CHROMAT_FILE: MSMg01no386_a22.g1 PHD_FILE: MSMg01no386_a22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:28:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCGTACCTCCGCGGA
ATTCAGTTCCTGTACCCAGCATAATGGAAGAGAACTGACTCCTGTGGGTT
GTCCTTTGACCTCCACACATGGCACATATAAGTGCTCTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCAACAAACAC
CTATCCCAACATCTACTCCCTCCTTAACCATTTTTTTCACATACTGAACA
TTTTATTTACATAAACTGTTCCCCATGCCGTAAACAATTTAGTATACACA
TCGCGTTCACTTACACACATCTTTTTTTTTTTTCCCCCCCACAAAAAAAT
ATAAACTGATCGATCTTTTTTTTTTCCTTCCCCCCTCCCCACTACTTCTC
ACATTCAAAGTCTTTTCAACATTGTTACCCCCCCCCCCCCCTCAACTCAA
ATACCAAATCACTCCTCCCCCCTTACCTCCTTTCAAAACAAACATTCTTC
AACAACCAATATCCACCCCTCACTCGCACCCATCCATACACTAAAACTAC
CGCTAACATACAACCCTACTATCCACTTTACCACACCCCAACTTTTACAC
CCTATAACTACCTAACTCACTCCCTACCAATATCCCCCTCCCCTTTCACC
CTTACCACTCCCCCTATCCCCCCCCCTAATAACACAACAACCTAACACAT
TACCCACCAACCCAAAATACTTTTATCACCCCTTCATTTAACCCTATTCA
CCCTTTCCTTCCTTATACAACCCATACATTCCCCCCACTTAAATTACAAA
CCTCCTCTACCTCCAATAACACCACATTAACACTCTCCCCCACTCCCCCT
TTCTATTTTTCCCACCTTTTACTTTCTCA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCTACCTCCCCAGAGCTCAAGGAATCACATGGTACA
TGGAATCCAACTGACATTAGCTGTGCACCGATGTAGAGGAATTTTAATCT
AGCAACATGGCTATTCTGGCTGGAATACAGAAACAAGCAGATCTCTCAGT
TCAAGGCCAGCCTGGGACAGAGCAAGTTCCAGATACAGAAAAGCTTAGAT
CCAGGAATGGGGGTTCATGCCTTTAACCCCGGCACTCAGCAGTCAGTTCT
GTTTGGACAGTTGATTTCAGTGCAGTGAAACTGAGTCAGGAAGTTGAGTT
ATCAGGTGAGAGTCAGAGCAGTGAGCAAGGTGCAGTGGAGTTGAGTTTGT
TCATGGGTGCATGCAGTTCTGTACAGGTCAGCAGAAGCAGGAGATCAGAA
CAAATCACCAGAGTTAGTGTGAGACCAAGCAGAGCAATTCAGTGAGAAGC
CAAGAGAAGACAGATTGAATCAGTCAGCTTGGAGAGGAGTTTGAGCCAGG
ACAGCTGAGTTGAAGCAACCAGCCAGAAGTCTGAAAGAGCTAGAAAGGGT
GAGCTTATTCAGCATAAGCCTCTGTCCAAGACAACAATTACATCAGGCAA
ATAAGTTACTTTTATACACAAATAATGTTTATAAGGAAGAAAATACATCC
CTAATTCACAAATGTGAAGCTTNAAAGGAGAGATTGGATCAATCGCACTT
GGTACTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no386_a22.g1 MSMg01no386_a22.g1 CHROMAT_FILE:
MSMg01no386_a22.g1 PHD_FILE: MSMg01no386_a22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:28:47 2005
         (687 letters)



>mm_chr9_77170354_77171440
          Length = 1087

 Score = 1201 bits (621), Expect = 0.0
 Identities = 671/688 (97%), Gaps = 2/688 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctacctccccagagctcaaggaatcacatggtacatggaatccaactgacattagctgtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctacctccccagagctcaaggaatcacatggtacatggaatccaactgacattagctgtg 260

                                                                       
Query: 61  caccgatgtagaggaattttaatctagcaacatggctattctggctggaatacagaaaca 120
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caccgatgtagagaaattttaatctagcaacatggctattctggctggaatacagaaaca 320

                                                                       
Query: 121 agcagatctctcagttcaaggccagcctgggacagagcaagttccagatacagaaaagct 180
           ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 321 agcagatctctgagttcaaggccagcctgggacagagcaagttccagatacagaaacgct 380

                                                                       
Query: 181 tagatccaggaatgggggttcatgcctttaaccccggcactcagcagtcagttctgtttg 240
           |||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 381 tagatccaagaatgggggtttacgcctttaaccccggcactcagcagtcagttctgtttg 440

                                                                       
Query: 241 gacagttgatttcagtgcagtgaaactgagtcaggaagttgagttatcaggtgagagtca 300
           ||||||||| ||||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct: 441 gacagttgagttcagtgcagtgaaactgagtcagggagttgagttatcatgtgagagtca 500

                                                                       
Query: 301 gagcagtgagca-aggtgcagtggagttgagtttgttcatgggtgcatgcagttctgtac 359
           | |||||||||| || ||||||||||||||||||||||||  ||||||||||||||||||
Sbjct: 501 gtgcagtgagcacag-tgcagtggagttgagtttgttcataagtgcatgcagttctgtac 559

                                                                       
Query: 360 aggtcagcagaagcaggagatcagaacaaatcaccagagttagtgtgagaccaagcagag 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 aggtcagcagaagcaggagatcagaacaaatcaccagagttagtgtgagaccaagcagag 619

                                                                       
Query: 420 caattcagtgagaagccaagagaagacagattgaatcagtcagcttggagaggagtttga 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 caattcagtgagaagccaagagaagacagattgaatcagtcagcttggagaggagtttga 679

                                                                       
Query: 480 gccaggacagctgagttgaagcaaccagccagaagtctgaaagagctagaaagggtgagc 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 gccaggacagctgagttgaagcaaccagccagaagtctgaaagagctagaaagggtgagc 739

                                                                       
Query: 540 ttattcagcataagcctctgtccaagacaacaattacatcaggcaaataagttactttta 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 ttattcagcataagcctctgtccaagacaacaattacatcaggcaaataagttactttta 799

                                                                       
Query: 600 tacacaaataatgtttataaggaagaaaatacatccctaattcacaaatgtgaagcttna 659
           ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 800 tacacaagtaatgtttataaggaagaaaatacatccctaattcacaaatgtgaagcttaa 859

                                       
Query: 660 aaggagagattggatcaatcgcacttgg 687
           ||||||||||||| ||||||||||||||
Sbjct: 860 aaggagagattgggtcaatcgcacttgg 887


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 687
Length of database: 1087
Length adjustment: 10
Effective length of query: 677
Effective length of database: 1077
Effective search space:   729129
Effective search space used:   729129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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