Query= MSMg01no386_c03.b1 MSMg01no386_c03.b1 CHROMAT_FILE:
MSMg01no386_c03.b1 PHD_FILE: MSMg01no386_c03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:28:53 2005
(549 letters)
>mm_chr9_50694540_50695489
Length = 950
Score = 1025 bits (530), Expect = 0.0
Identities = 545/550 (99%), Gaps = 1/550 (0%)
Strand = Plus / Minus
Query: 1 ccaagctgatgggatgggttcagctgagctatgaggatggcaaagcacaccatgcaaggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 ccaagctgatgggatgggttcagctgagctatgaggatggcaaagcacaccatgcaaggg 691
Query: 61 acccagctcattgcctgtgcctcacctgagacccactggaactacaagtcaccacagaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 acccagctcattgcctgtgcctcacctgagacccactggaactacaagtcaccacagaaa 631
Query: 121 cccagaagtttactcatcaaagtgaaggccaaagggcaggcaggcagtcggaagggtacc 180
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 630 cccagaagtttactcatcaaagtgaaggccaaagggcaggcaggcagtcagaagggtacc 571
Query: 181 aggaaatgaagagagaggctggctccccagtccaaaccagtgggtagctagacaggcact 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 aggaaatgaagagagaggctggctccccagtccaaaccagtgggtagctagacaggcact 511
Query: 241 gcaggtgagt-gtaccactccgtcctgtcagatagcacaggaggcagcaacaaatctgaa 299
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 acaggtgagtagtaccactccgtcctgtcagatagcacaggaggcagcaacaaatctgaa 451
Query: 300 ctcaatccttagtccctagacctgccactaacctatgcaggtcactctaagggctcactg 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 ctcaatccttagtccctagacctgccactaacctatgcaggtcactctaagggctcactg 391
Query: 360 tccccacccgtgatgggagcagcctgactcagcacctccctttaacatggaaacattatg 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 tccccacccgtgatgggagcagcctgactcagcacctccctttaacatggaaacattatg 331
Query: 420 attggaccaactccccttgaccacttgccactactctgtctgacactatgctaggaaatg 479
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 330 attggaccaactccccttgaccacttgccactactctgtctgacactaggctaggaaatg 271
Query: 480 gctatgcaggtgcctgtgaagtctcttctcactaactgaaaggtgattaccctcactggc 539
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 gctatgcaggtgcctgtgaagtctcttctcactaactgaaaggtgattaccctcactggt 211
Query: 540 aactcagtcc 549
||||||||||
Sbjct: 210 aactcagtcc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 950
Length adjustment: 10
Effective length of query: 539
Effective length of database: 940
Effective search space: 506660
Effective search space used: 506660
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no386_c03.g1 MSMg01no386_c03.g1 CHROMAT_FILE:
MSMg01no386_c03.g1 PHD_FILE: MSMg01no386_c03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:28:53 2005
(488 letters)
>mm_chr9_50517471_50518357
Length = 887
Score = 882 bits (456), Expect = 0.0
Identities = 480/488 (98%), Gaps = 1/488 (0%)
Strand = Plus / Plus
Query: 1 tgagtgagggacactcagcctgaactcagactcacatcacaaataaatcacaatcgcaca 60
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgagtgagggacactcagcccgaactcagactcacatcacaaataaatcacaatcgcaca 260
Query: 61 cttggctatttttctttgacacatacttaagtccttatttatttttatagattttccctt 120
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct: 261 cttggctatttttctttgacacatacttaagtctttatttatttttatagatttttcctt 320
Query: 121 ttgtttcctgaaaacaggaatgataatatctattttctaagggtatgatggccaaatcaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgtttcctgaaaacaggaatgataatatctattttctaagggtatgatggccaaatcaa 380
Query: 181 ttcacacaagatagaaagcattccatcctagcagccgtggttactactgcctcgtgaata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttcacacaagatagaaagcattccatcctagcagccgtggttactactgcctcgtgaata 440
Query: 241 caagaaaagtattcacagataggctgcccgtggaaagcagctccctccacaccacagacc 300
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 441 caagaaa-gtattcacagataggctgcctgtggaaagcagctccctccacaccacagacc 499
Query: 301 tctggggacactaagcaacatcaactcaccaataataaatgctggagaacttattctgtg 360
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct: 500 tctggggacactaagcaacatcaactgaccaataataaatgttggagaacttattctgtg 559
Query: 361 catccgactagggttcgtggaaccaaaaaagcaaaatacagtgtaacaacctctttaaaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 catccgactagggttcgtggaaccaaaaaagcaaaatacagtgtaacaacctctttaaaa 619
Query: 421 gctcagtctaaatcatggctaattgctagtcaggggagagaaatcatagcaagctatggg 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gctcagtctaaatcatggctaattgctagtcaggggagagaaatcatagcaagctatgga 679
Query: 481 caaacatc 488
||||||||
Sbjct: 680 caaacatc 687
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 887
Length adjustment: 10
Effective length of query: 478
Effective length of database: 877
Effective search space: 419206
Effective search space used: 419206
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
