BAC Information

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BAC

Clone NameMSMg01-387M22
Chromosome9 (Build37)
Map Location 87,455,581 - 87,455,763
singlet/doubletsinglet
Overlap genenone
Upstream genePgm3, Rwdd2, Mod1, Prss35, Snap91, C030002E08Rik, Cyb5r4, LOC666777, LOC244958, LOC100039510, 4922501C03Rik, LOC671706
Downstream geneTbx18, LOC671731, LOC100039580, LOC384962, EG272633, Nt5e, Snx14, LOC100039601, Syncrip, 2810026P18Rik, 4930422I07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-387M22.T7 (MSMg01no387_m22.b1)MSMg01-387M22.TJ (MSMg01no387_m22.g1)
ACCAG490453AG490454
length787831
length of high quality
(start - end)
183 (112 - 294)---
definitionCHROMAT_FILE: MSMg01no387_m22.b1 PHD_FILE: MSMg01no387_m22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:30:58 2005CHROMAT_FILE: MSMg01no387_m22.g1 PHD_FILE: MSMg01no387_m22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:30:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCATAACXXXXXXXXXXXXXXXXXXXXXXXXXTCCCAGAGGATCCGCGG
AATTCAATTCTTTCCCAAGACATAGAACAGGGTCTTAAGTGAATGCTTAA
TCAATTCACTCATACCTGATACAAAAGTAATATGAAGAGAGCTTACAGAT
CTCCAACATATTCTATATGAGTTCAAGGGATTCAAGGACTTGCTTCTATA
GCTATGAAGCTGACCATGGATGGGTCTCTAATTCATGGGATCTGGCTTAA
GAAGAAAGCCACTCAGAAGGAGAAATTAGTTGCCCGGTGAAGCATGAAAA
CACTGGAGGGAAAGCACAGGAAGTTCCTTCAGTCTACCTACCTGTCTACC
CTTTTAACCACAAGATCTATGATCTTGACAGTCAAGAACAGCCTTTCTTC
AGGCAAGTCTCATCCCTGGCAAGCCATTCCACTCTTCTCTTGAAATTCTT
TTTTTTTTTTAATCCCACATCTTTCTTCGAATGCTCTCCCCCCCCANTTC
TCCCCCACCCCCCCTCCCCTGCTGCCTTTTTCCCTTCCCCCCTCATCCTT
CTATTCCCTCCCCTTCTTCCCCCTTTACTCCTTTTTCTCCCCCCTCCTCC
CTTCCCCCCCTCCCTCCCTCTTTCCCCCCCCCCTCCCTTTCCCCTTTTCC
CCCTCCTTTCCCCCCTTCCTTCCCCCTTTCCCCCCCTTCGCTCCCCCCCC
TTTCTCTTTTTCTTTTCCTCCCTCCTTTCCCCCCCTCCCCACTTTCCCCC
ATCTTCTCCCCTCCCCCTCTTCCTCCCCCTTCTTTTT
NCCATGCCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCACTNTTCCAGGTGGTCTCCCTT
TAGGATGAACTAAAGCCCCCTAGAGAAGAGTCCTCCCCTCTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNTTTTTTTTTNNNNNNNNNNTNNNNTTNNTNTTTTTNTTTTTTTT
NNNTTTNNTTNNTNNNTTTTNTTTTTTTTTTTNTNTNTTTTTNNTTTTTT
TTTTTNTTTTTTTTTTTTTTTNTTTTTNTTTTTTTTGGGGGGGGGTTTTT
TTTTTTGTTTTTTNTTTNCCCCTTTTNTTGTGGTTTTTTTGGTTTTTTTT
GTTTNNTTGTGGTGGTTTTGTTGTTTGTGGTTTGGTTGTTTTTTGTTTTT
TTTTGTTTTTTTTTTTTTGTGTTTTTTTTTTTTTTTTTTTTGTTTTTTGT
TTTTTTTTTTTGTTTTTGTTTTTTTTTTTTCTGTTTTTTTTTCGTTTCTC
CTTTTGCCCTCCCCCTCCTTTCCCCCCCCCCCTTCCCTCTCCCCCCCCCC
TCCCCCCCCCCCCTCCCTTCCCCCTCCCCCTTCCCCCCTTCCCCCCCTCC
CCCCCCTCCCCCCCCTTCCCCCCCCCCCCCCCCCCTTCCCCCTCCTCCCT
CCCCCCCTCTTCCTTTCCCCCCCCTCCCCCTCCCCCCCCCTCCCCTCTNT
TTTTTCCCTCCCCCCCCCCCCCCCCCCCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no387_m22.b1 MSMg01no387_m22.b1 CHROMAT_FILE:
MSMg01no387_m22.b1 PHD_FILE: MSMg01no387_m22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:30:58 2005
         (183 letters)



>mm_chr9_87455381_87455963
          Length = 583

 Score =  346 bits (179), Expect = e-100
 Identities = 182/183 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atacctgatacaaaagtaatatgaagagagcttacagatctccaacatattctatatgag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 atacctgatacaaaagtaatatgaagagagcttacagatctccaacatattctatatgag 324

                                                                       
Query: 61  ttcaagggattcaaggacttgcttctatagctatgaagctgaccatggatgggtctctaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ttcaagggattcaaggacttgcttctatagctatgaagctgaccatggatgggtctctaa 264

                                                                       
Query: 121 ttcatgggatctggcttaagaagaaagccactcagaaggagaaattagttgcccggtgaa 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 263 ttcatgggatctggcttaagaagaaagccactcagaaggagaaattagttgcccagtgaa 204

              
Query: 181 gca 183
           |||
Sbjct: 203 gca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 183
Length of database: 583
Length adjustment: 8
Effective length of query: 175
Effective length of database: 575
Effective search space:   100625
Effective search space used:   100625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)