BAC Information

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BAC

Clone NameMSMg01-388O01
Chromosome9 (Build37)
Map Location 107,729,232 - 107,729,760
singlet/doubletsinglet
Overlap geneRbm6
Upstream geneVprbp, Armet, Dock3, Mapkapk3, Cish, Hemk1, 6430571L13Rik, Cacna2d2, Tmem115, Cyb561d2, Tusc4, Zmynd10, Rassf1, Tusc2, Hyal2, Hyal1, Nat6, Hyal3, Ifrd2, BY080835, Sema3b, Gnai2, Slc38a3, Gnat1, Sema3f, Rbm5
Downstream geneMon1a, Mst1r, 4921517D21Rik, Camkv, Traip, Ube1l, D330022A01Rik, 6230427J02Rik, 1700021K14Rik, Ihpk1, Gmppb, Rnf123, Amigo3, Mst1, Apeh, Bsn, LOC100042108, Dag1, Nicn1, EG434437, Tcta, Rhoa, Gpx1, Usp4, LOC623859, 1700102P08Rik, Ccdc36, BC048562, Klhdc8b, LOC100042228, Ccdc71, Lamb2, Usp19, Qars, Qrich1, Impdh2, 4733401H18Rik, Dalrd3, Wdr6, 4933406E20Rik, Arih2, ENSMUSG00000074075, Slc25a20, Prkar2a, Ihpk2, Nckipsd, Celsr3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-388O01.T7 (MSMg01no388_o01.b1)MSMg01-388O01.TJ (MSMg01no388_o01.g1)
ACCAG491267AG491268
length811768
length of high quality
(start - end)		102 (59 - 160)529 (75 - 603)
definitionCHROMAT_FILE: MSMg01no388_o01.b1 PHD_FILE: MSMg01no388_o01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:32:18 2005CHROMAT_FILE: MSMg01no388_o01.g1 PHD_FILE: MSMg01no388_o01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:32:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCCGCTAAAAGAATACTACTTCAAAAACAGCGCGGAATTNCTTGCATTTG
CGCTGATGGTCTATATAATTTTCCATAATATGTATACAAGATACCCACTG
ATCTCTATTTTTTTAATTTTGGAGTAGGCATGTTATGGTGTATGTGTGGC
GTATATACTCGCTGTAGTGGCTGTGTGGATACACATATGTGAAGGGCAGA
GGACATCATCAGGTGACTCTTCTCCATTGGACTCTATATTTTTTGAGACA
GTGAGCTTCACGAACCTGTCTCTTTGTCTCTACACTCTCAGTGCTGTAGC
TACAGGCCTATTTTTGGCTTTTTTTGAGCTCTGCAGATCTTCAGGTTCCC
CCACCCCCGCCATTACTGGCTCAGGTGCCTCCACCGTCTGTATTTTGACC
CCCCCCCCCCCCCACTATAGCCTTTAATCCACTGCAGCAACCACCCATCA
CCCTGAACCACTGTCTCCCCGACTGCACTGGCCACATCCCCCACCTCTAC
TGTTTACTATCCTTCCCCCACCCCCCCCACGCCCCCTCACCAACTCCCGC
CCCTCCTCTCCTGCCTCCCATTACCACCCCCCCCCCCCCCCTGCTCCCCC
CTCCTCCCCTCCCTCTTCTTCTCCCCACCCCACCCCCCCCCCCCCCCTTC
CCCCTTCTTCTCCCCCTCCTCCCTCTCTCTTCTTTCCCCCCCCTTTCCAC
CTCCTCCCCCCTCCTCCCTTGTCTTTTCCCTCTCTTCCCCCCGATCACAC
CCCCCTCCCTCCCCCCCCCGCCCTCCTCTCTTTCCCTCCTCTCTCCTTTT
CCTCCCCCCCG

CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTTATCAGCGACATTCAAGGACAGCCTGCTTTACACAGGGA
GGTATAATCCCACCAAGGCCACATAGTGAGAACTGTTTCAAGAAAGGTTT
TCCAGAGGCTTGATAATATACACACTTATAGAGGTTGCAGCCAGAAAAGT
ATAACTTTGAAACCAGCCTGGATCTGAAACAGGCCCTGGTTCAAATACAA
AAAAGATTTGTTGAACCAGTGAGACAATTAACTGTGTAAAGGCACCTGCA
GCCCATTCCTGATACCTGATTTTGATTCCAGGAACCCTAGTAAAAGTGCA
AAGAGAGAACAAACTCTACACAGCTATCCTCTGGCATCTACACATGCATG
GGTACACATAAACACATCCTGTCTTATTTTGTTTAAAAATTAAGATATTT
TAAGACACAAAAAGTAAATAAGACCTGGCTTCCTGAATAGACCTTCACAG
AAACCCTAGCCACGCTAGTCTTTTCAAATAATCCAAACTCTTAATTTTGT
TGGCAGGAAAATAGTTTTGTAAAACACATATTTCACAGCCTTCCTTTCTC
ACAGAAGAAAAAAAAATAGCATTACAAGAAATTTTTATGTTAGGTGGTAA
CAGCAGCTTCTTTCTTTGTACCTTAGAAAGTCAAAATAATTGTGTCATAT
CAAAGCTGAAAGCCTACCAGGTAGTAGTGGCACATGCCTTTAATCCCACC
ACTTAAGAGACAGAAACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no388_o01.g1 MSMg01no388_o01.g1 CHROMAT_FILE:
MSMg01no388_o01.g1 PHD_FILE: MSMg01no388_o01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:32:18 2005
         (529 letters)



>mm_chr9_107729032_107729960
          Length = 929

 Score =  984 bits (509), Expect = 0.0
 Identities = 524/529 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaggacagcctgctttacacagggaggtataatcccaccaaggccacatagtgagaact 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 caaggacagcctgctttacacagggaggtataatcccaccaaggccacattgtgagaact 260

                                                                       
Query: 61  gtttcaagaaaggttttccagaggcttgataatatacacacttatagaggttgcagccag 120
           ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 261 gtttcaagaaaggttttccagagacatgataatatacacacttatagaggttgcagccag 320

                                                                       
Query: 121 aaaagtataactttgaaaccagcctggatctgaaacaggccctggttcaaatacaaaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaagtataactttgaaaccagcctggatctgaaacaggccctggttcaaatacaaaaaa 380

                                                                       
Query: 181 gatttgttgaaccagtgagacaattaactgtgtaaaggcacctgcagcccattcctgata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gatttgttgaaccagtgagacaattaactgtgtaaaggcacctgcagcccattcctgata 440

                                                                       
Query: 241 cctgattttgattccaggaaccctagtaaaagtgcaaagagagaacaaactctacacagc 300
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cctgagtttgattccaggaaccctagtaaaagtgcaaagagagaacaaactctacacagc 500

                                                                       
Query: 301 tatcctctggcatctacacatgcatgggtacacataaacacatcctgtcttattttgttt 360
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 501 tatcctctggcatctacacatgcatgggtacccataaacacatcctgtcttattttgttt 560

                                                                       
Query: 361 aaaaattaagatattttaagacacaaaaagtaaataagacctggcttcctgaatagacct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaaaattaagatattttaagacacaaaaagtaaataagacctggcttcctgaatagacct 620

                                                                       
Query: 421 tcacagaaaccctagccacgctagtcttttcaaataatccaaactcttaattttgttggc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcacagaaaccctagccacgctagtcttttcaaataatccaaactcttaattttgttggc 680

                                                            
Query: 481 aggaaaatagttttgtaaaacacatatttcacagccttcctttctcaca 529
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aggaaaatagttttgtaaaacacatatttcacagccttcctttctcaca 729


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 929
Length adjustment: 10
Effective length of query: 519
Effective length of database: 919
Effective search space:   476961
Effective search space used:   476961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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