BAC Information

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BAC

Clone NameMSMg01-389M02
Chromosome9 (Build37)
Map Location 90,093,187 - 90,093,632
singlet/doubletsinglet
Overlap geneAdamts7
Upstream geneBcl2a1b, Mthfs, AF529169, Tmed3, B230218L05Rik, Rasgrf1, Ctsh, Morf4l1, LOC621414
Downstream geneTbc1d2b, LOC100039777, LOC100039925, EG434428
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-389M02.T7 (MSMg01no389_m02.b1)MSMg01-389M02.TJ (MSMg01no389_m02.g1)
ACCAG491935AG491936
length729752
length of high quality
(start - end)
275 (82 - 356)446 (83 - 528)
definitionCHROMAT_FILE: MSMg01no389_m02.b1 PHD_FILE: MSMg01no389_m02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:28 2005CHROMAT_FILE: MSMg01no389_m02.g1 PHD_FILE: MSMg01no389_m02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCACCCCCCTCTATAATTTGGCGGCGCTAAACGACTCACTATTCCCAGA
GGAGCCGCGGAATTCAAGGCTTCTACCTAAACATGGTAAAAGCAATCTAC
AGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAAT
CCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCCCCCTACCTTT
TCAACATAGTACTTGAATTCCTTGCCAGAGCAATTCGACAACAAAGGGAG
ATCAAGGGGATACAAATTGGAAAAGAGGAACTCAAAATATCACTTTTTGC
AGATGATATGATAGTATATATAAGTGACCCTAAAAATACTACCAGAGAAC
TCCTAAACCCGATAAACAGCTTCGCTGAAGTAGCTGGATATAAAATAAAC
TCACACAAGTCAATGGCCTTTCTCTATACCAAGAATAAACAGGCTGAGAA
AGAAATTAGGGAAACCACACCCTTCTCAATAGTCCCAAATAATATAACAT
ATCTTGGCCCGACTCCTAACTAACGAAGTGAACGATCTGTACGACAACAC
CTTCCAACCCCTGACGAACGAAATTACCAGAAGATCTCACACCATGGAAA
GATCCTCCATGCCCATGGACTGGCACGATCCCCCTTGTCACCCATGGCTA
TCTTGCCCCCAGTCACCCTACGACCCCATGCAACCCCCACCCCACCTTCC
ACCCCCCCTCCTCCCCCACCTACCACGCG
NNNCCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGCTCTATCAGAAATAG
CGTGGCTCTGGAGGCTGTGGGTTTGCAAGGTCTCCAAGAGGAATGGGAAG
GGTGGGCTTAGCAGGGACCCAAAGCCTATCCATGTGAAGGGCCTCCCTGT
GCCCCTACCCGCCTTCCCAGCACCCTCCCCCTCTCAAGTAAAGGGAGCCA
AACAGGGAAGACTCTAGGATCGCAAGTTCCTGGAGCTTCCAGGATGTTTT
GATGGTTTGTGGGATTGTTCAACAGGACATTTGGAAATCCTGGAAACTCC
AGGGTGTGTGATCACCGTGGCAAGGCAGCTCACATGCCGGGTCATGTGAC
CTTCCCCAGGGAGGTGGGGGCTGTTATCAAGAGGAAACCTTCACTCAGTG
CTTAGGTCTGCTGGAGGTCACCCAGGGGAACTAGTGTGTCAGTTTGGAGT
TGCTGCCGAAAGGATAGGGTGGAGGGGCTTGTCTGCTGTCTTGTTCCCTC
CGCTGGCCCTGGGGATGGCCCAGACTAGTGTCCACAGCTGTCCTCCTGTC
GCTCCACCCTAAGGAATCTACACAAATATGTAAGGGTTCTTGGCATTTTG
TTCCTCTAACACCCTGTTACCTCTTATTCACTATTCTCTGGTTATTAAAG
CCCATCTCCCTGACACTCTCTTCACCTCCCAAAAAAATTTTTTCTGGGTA
GT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no389_m02.g1 MSMg01no389_m02.g1 CHROMAT_FILE:
MSMg01no389_m02.g1 PHD_FILE: MSMg01no389_m02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:33:28 2005
         (446 letters)



>mm_chr9_90092987_90093832
          Length = 846

 Score =  839 bits (434), Expect = 0.0
 Identities = 443/446 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggctctatcagaaatagcgtggctctggaggctgtgggtttgcaaggtctccaagagga 60
           |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 201 aggctctatccgaaatagcgtggctcaggaggctgtgggtttgcaaggtctccaagagga 260

                                                                       
Query: 61  atgggaagggtgggcttagcagggacccaaagcctatccatgtgaagggcctccctgtgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgggaagggtgggcttagcagggacccaaagcctatccatgtgaagggcctccctgtgc 320

                                                                       
Query: 121 ccctacccgccttcccagcaccctccccctctcaagtaaagggagccaaacagggaagac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 321 ccctacccgccttcccagcaccctccccctctcaagtaaagggagccaatcagggaagac 380

                                                                       
Query: 181 tctaggatcgcaagttcctggagcttccaggatgttttgatggtttgtgggattgttcaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctaggatcgcaagttcctggagcttccaggatgttttgatggtttgtgggattgttcaa 440

                                                                       
Query: 241 caggacatttggaaatcctggaaactccagggtgtgtgatcaccgtggcaaggcagctca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caggacatttggaaatcctggaaactccagggtgtgtgatcaccgtggcaaggcagctca 500

                                                                       
Query: 301 catgccgggtcatgtgaccttccccagggaggtgggggctgttatcaagaggaaaccttc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 catgccgggtcatgtgaccttccccagggaggtgggggctgttatcaagaggaaaccttc 560

                                                                       
Query: 361 actcagtgcttaggtctgctggaggtcacccaggggaactagtgtgtcagtttggagttg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 actcagtgcttaggtctgctggaggtcacccaggggaactagtgtgtcagtttggagttg 620

                                     
Query: 421 ctgccgaaaggatagggtggaggggc 446
           ||||||||||||||||||||||||||
Sbjct: 621 ctgccgaaaggatagggtggaggggc 646


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 446
Length of database: 846
Length adjustment: 10
Effective length of query: 436
Effective length of database: 836
Effective search space:   364496
Effective search space used:   364496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)