BAC Information

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BAC

Clone NameMSMg01-389N19
Chromosome9 (Build37)
Map Location 81,997,402 - 81,997,820
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039038, Htr1b, LOC671392, 4930486G11Rik
Downstream geneLOC100039085, Irak1bp1, Phip, LOC100039144
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-389N19.T7 (MSMg01no389_n19.b1)MSMg01-389N19.TJ (MSMg01no389_n19.g1)
ACCAG492016AG492017
length777770
length of high quality
(start - end)
423 (49 - 471)468 (84 - 551)
definitionCHROMAT_FILE: MSMg01no389_n19.b1 PHD_FILE: MSMg01no389_n19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:36 2005CHROMAT_FILE: MSMg01no389_n19.g1 PHD_FILE: MSMg01no389_n19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTCAAATTTTGACCTGAAAGTCTTTTTTAAAATACAAATTTTA
AACCTTAGCATATCCTAAAAATTATAAAAAGTATAACAGCCCACATTTTG
GCTTTTGATTTTAAAACTGTTTGAGGATATTGATAAACAGTAAAACCAAG
TTTTCCTCAATATAAGCTTAATGTGTGTTCCATGAATATCATAAAAATAT
AGCTCTCATCAGAATATCCACTGCTTTAAAATTTTAAATATAGACTGTAT
AATGCAATTTTTATTTTCTCAGTTATCAAATATTTCTTCAGAACGATCTT
GCTAGTATATTTTATGGCATGACAAGTCTGCAATAAAATCTGGAAGGTTT
AAATACAATGTGTTGCCCATTAACTCTGTGAATTAGGGTAGCTTCTAAAG
GAAAAACTACTAAATTGCAGCCAGCATGAAGAAATTGGACAGGGTTGTGA
TTGCCATCTGTAAACTGTGGCCCTCCATTATCCCGGCATGTGCCTTAANG
CCATGCAATGGCCTCTAAATCAAATTTACACTTAAATGATGCCCAGTTAT
GTTTCCTCCTTACCCCCAACCCTGCACAAGGTTGCCCCTTGATGCCTTTT
CATCCTGTCTTCAAACTCAGCACCACCATTTTCAACGTGGGCCTTTTAAC
AAAATTTCCTCCCCCCCCAACTTTTTACCCATTCATCCTACAATTCTCCC
CTACCTTCCCCCATCCCCATTACTTTA
NNNNNCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTCAGTTCTATAC
TTCATTTTTGATTGTTTTTTTTTTTTTGAGGTTGGTACATATAGAGACAG
CTTGATCAATTGAATAGAATTAAAGACACAGAAATAAAACCACACACTTG
ATGGACACTTGATCTTTGAAAAAGAAGCCAAAAAAAAGAAAAAAAAATGG
AGAAGGAAAGCATCTTCAATAAATGATGCTGGATTAACTGGCAGTTATTA
TGTAGAAAATGAAAATAGAGCAATATTTGTTGCCTTGCACAAAGCTCAAG
GCCAAGTGGATCAAAGACCTCAACATAAAACCAGATACACTGAATCTAAT
AGAAGAGAAAGTGGGAAAGAGCCTCCAACTTATGGGCATGGGGGAAGTTT
CCTAAACAGAACTCCAATGGCTCAGGCTGGATCAGGAATTGATAAATGGG
ACCTCATGAAACTGAAAAGCTTCTGTAAGGCAGATGACATTGTTAATAGG
ACAAATCGGAAACCTACAGATTGGCAAAAATCGAAGCAAAAAACCCCACC
CACCCCACAAACAAATAAAAACCAAAACTCTGCTAACCCCGCATCTGATA
GAGAGCCTATATCCCAAATGCCTAAAGAACTCCCGAGCCTAACCCCCAAA
AAGCAAAACACCTATCCAAAAAAGGGGCAAAGGAAACCTAAGGATGGGAT
TTTTTAATTTCCTAATAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no389_n19.b1 MSMg01no389_n19.b1 CHROMAT_FILE:
MSMg01no389_n19.b1 PHD_FILE: MSMg01no389_n19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:33:36 2005
         (423 letters)



>mm_chr9_81997198_81998020
          Length = 823

 Score =  787 bits (407), Expect = 0.0
 Identities = 416/419 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctcaaattttgacctgaaagtcttttttaaaatacaaattttaaaccttagcata 64
           |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 gaattctcaaattttgaagtgaaagtcttttttaaaatacaaattttaaaccttagcata 564

                                                                       
Query: 65  tcctaaaaattataaaaagtataacagcccacattttggcttttgattttaaaactgttt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 tcctaaaaattataaaaagtataacagcccacattttggcttttgattttaaaactgttt 504

                                                                       
Query: 125 gaggatattgataaacagtaaaaccaagttttcctcaatataagcttaatgtgtgttcca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 gaggatattgataaacagtaaaaccaagttttcctcaatataagcttaatgtgtgttcca 444

                                                                       
Query: 185 tgaatatcataaaaatatagctctcatcagaatatccactgctttaaaattttaaatata 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tgaatatcataaaaatatagctctcatcagaatatccactgctttaaaattttaaatata 384

                                                                       
Query: 245 gactgtataatgcaatttttattttctcagttatcaaatatttcttcagaacgatcttgc 304
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gattgtataatgcaatttttattttctcagttatcaaatatttcttcagaacgatcttgc 324

                                                                       
Query: 305 tagtatattttatggcatgacaagtctgcaataaaatctggaaggtttaaatacaatgtg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tagtatattttatggcatgacaagtctgcaataaaatctggaaggtttaaatacaatgtg 264

                                                                      
Query: 365 ttgcccattaactctgtgaattagggtagcttctaaaggaaaaactactaaattgcagc 423
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ttgcccattaactctgtgaattagggtagcttctaaaggaaaaactactaaattgcagc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 423
Length of database: 823
Length adjustment: 9
Effective length of query: 414
Effective length of database: 814
Effective search space:   336996
Effective search space used:   336996
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)