BAC Information

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BAC

Clone NameMSMg01-390B12
Chromosome9 (Build37)
Map Location 65,918,625 - 66,078,927
singlet/doubletdoublet
Overlap geneSnx1, 5730536A07Rik, Dapk2
Upstream geneDpp8, Nope, Punc, Parp16, Cilp, Clpx, Pdcd7, Gm514, 5430433E21Rik, Rasl12, Ostb, Mtfmt, Spg21, Ankdd1a, Plekhq1, Pif1, LOC100041121, Rbpms2, Oaz2, Zfp609, LOC100041180, Trip4, 2810417H13Rik, Csnk1g1, Ppib, Snx22
Downstream geneHerc1, Fbxl22, Usp3, Car12, Aph1b, LOC623488, Aph1c, Rab8b, Rps27l, Lactb, Tpm1, Tln2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-390B12.T7 (MSMg01no390_b12.b1)MSMg01-390B12.TJ (MSMg01no390_b12.g1)
ACCAG492191AG492192
length747751
length of high quality
(start - end)
236 (335 - 570)519 (81 - 599)
definitionCHROMAT_FILE: MSMg01no390_b12.b1 PHD_FILE: MSMg01no390_b12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:54 2005CHROMAT_FILE: MSMg01no390_b12.g1 PHD_FILE: MSMg01no390_b12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:54 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,918,625 - 65,918,860)(66,078,438 - 66,078,927)
sequence
NNNAACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTCAAACACC
GCGGAATTCAAAGNCAGTTCGAACAACTCAGCCAGGACCCAATAGTGGCT
TCCTTATGGGCTTGTTCAGCTGGGATGGATGGGTGATGGTGGACAGATAA
TAAGAAGTAGGTACAGAAATGTGTGTAGAGAAGAGGAACAAAAATGGATG
TAGAGGCGGTGGCCCCAGCTGCTCTCATCTGCCCTGCTGGTCTTCTTTAG
AATGTAGTATGATTTTTGGTTGGCACATTGCTTAGTTTGGGTTTGGTTTT
TCTAAATATGTAGATACGTTTTCTCTGTTTATTCCTTGCTGTCCTGAAAC
TCCATCTTTAAACCAGGCTGGCCTCTAACTCAGAGATCTGCCTGCCTCTG
CCTCCCAAGTACTGGGATTAAAGATGTGTGCCTGCCTGGCTATAGTAAGA
TTTCAAGACAGAATGATCACTTCATGTGTAAACACAGAAATGGCTTCCAT
TTCTACCTCAGCCCCACACTCCTTACTGGGCTCTAGGTAAAGTGCTCAAT
GGCCCAGTGTTCTGTTCTCAAACTGGGTCATGTGTGATGGTTATTCTGAA
TTGCCCACATGGCTACCGGTAGAGTTAACTAAAAAGACTAACCTACCTAT
ATAAAGACCTCCACTCCGTATTTTTGGTTAACAGCCGGATCTTTTGAGGT
AGGAAGACCCCCTCTAATTTTGGGCCACCCCTTTCCGGGCATCCCCC
TTTCCCTATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTGCAGTCACCAGACCAAT
GAATAACAACAACTCCCTAACACACGATTCATGAAAGGAGAAGCCACAGA
CTACAGTGAGGCATACCAGTCCATCACTGTCATGGGCCCTCTCCAATATG
TGCTTGTCCTGTAGATCACCAGGTGACAAATTCCAAACTGTCCTGGACTC
AACTAAGAGTGATTTTCCCTGCTCCTGGTACTGCCCACTCAGAAGCTATC
TGGACACAATGTCAGATTGCATGTATTATTCTCCATTTGTACCAACCCTC
ACTCTGCATGTGTGTTCATTTGTGCACACATGCACGTAGAAACAAGAGAT
ACGTGTCAAATGTCTGTCTCAAGTGCTCTCTGCCTTATATTTTGAGACAA
GATCGCTCACTGAACCTAGAACTCTGGATTCTGCTAAACTGGATGCCTGC
AAGCTCTTCCTGTCTCCTTTTCCCTAGTGCAGAAATCAGAGATGCATGGC
TTCAATGTGAGAGCTTAGGGACTTGGACCTAGGTCTTTGTGCTTATGCAG
CGAGCACTTTACGAACTGACCCATGCCCACAGCCCAGGCATCAATCTGTA
ATATCTTTTAAAGTCCTACAGTTTATCAAGCCTTGGTGGTACATGCTTTT
AATCCCAGATATTAGATTGGGACACATAAACCCTTGTTGAGTTCCCGGGG
N
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no390_b12.b1 MSMg01no390_b12.b1 CHROMAT_FILE:
MSMg01no390_b12.b1 PHD_FILE: MSMg01no390_b12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:33:54 2005
         (236 letters)



>mm_chr9_65918425_65919060
          Length = 636

 Score =  456 bits (236), Expect = e-133
 Identities = 236/236 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttgctgtcctgaaactccatctttaaaccaggctggcctctaactcagagatctgcctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttgctgtcctgaaactccatctttaaaccaggctggcctctaactcagagatctgcctg 260

                                                                       
Query: 61  cctctgcctcccaagtactgggattaaagatgtgtgcctgcctggctatagtaagatttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctctgcctcccaagtactgggattaaagatgtgtgcctgcctggctatagtaagatttc 320

                                                                       
Query: 121 aagacagaatgatcacttcatgtgtaaacacagaaatggcttccatttctacctcagccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagacagaatgatcacttcatgtgtaaacacagaaatggcttccatttctacctcagccc 380

                                                                   
Query: 181 cacactccttactgggctctaggtaaagtgctcaatggcccagtgttctgttctca 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cacactccttactgggctctaggtaaagtgctcaatggcccagtgttctgttctca 436


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 236
Length of database: 636
Length adjustment: 9
Effective length of query: 227
Effective length of database: 627
Effective search space:   142329
Effective search space used:   142329
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no390_b12.g1 MSMg01no390_b12.g1 CHROMAT_FILE:
MSMg01no390_b12.g1 PHD_FILE: MSMg01no390_b12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:33:54 2005
         (519 letters)



>mm_chr9_66078438_66079356
          Length = 919

 Score =  855 bits (442), Expect = 0.0
 Identities = 478/490 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   attgcagtcaccagaccaatgaataacaacaactccctaacacacgattcatgaaaggag 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 490 attgcagtcaccagaccaatgaataacaacaactccctaacacacgactcatgaaaggag 431

                                                                       
Query: 61  aagccacagactacagtgaggcataccagtccatcactgtcatgggccctctccaatatg 120
           ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct: 430 aagccacagactacagtgaggcacaccagtccatcactgtcatgggccccctccaatatg 371

                                                                       
Query: 121 tgcttgtcctgtagatcaccaggtgacaaattccaaactgtcctggactcaactaagagt 180
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 tgcttgtcttgtagatcaccaggtgacaaattccaaactgtcctggactcaactaagagt 311

                                                                       
Query: 181 gattttccctgctcctggtactgcccactcagaagctatctggacacaatgtcagattgc 240
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct: 310 gattttccctgctcctggtactgcccactcagaagctatctggacccaatgtcagatcgc 251

                                                                       
Query: 241 atgtattattctccatttgtaccaaccctcactctgcatgtgtgttcatttgtgcacaca 300
           ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 atgaagtattctccatttgtaccaaccctcactctgcatgtgtgttcatttgtgcacaca 191

                                                                       
Query: 301 tgcacgtagaaacaagagatacgtgtcaaatgtctgtctcaagtgctctctgccttatat 360
           |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 190 tgcacgtagaaacaagagatccatgtcaaatgtctgtctcaagtgctctctgccttatat 131

                                                                       
Query: 361 tttgagacaagatcgctcactgaacctagaactctggattctgctaaactggatgcctgc 420
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 tttgagacaagatcactcactgaacctagaactctggattctgctaaactggatgcctgc 71

                                                                       
Query: 421 aagctcttcctgtctccttttccctagtgcagaaatcagagatgcatggcttcaatgtga 480
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 70  aagctcttcctgtctccttttccctagtgcagaaatcagagatgcgtggcttcaatgtga 11

                     
Query: 481 gagcttaggg 490
           ||||||||||
Sbjct: 10  gagcttaggg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 919
Length adjustment: 10
Effective length of query: 509
Effective length of database: 909
Effective search space:   462681
Effective search space used:   462681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)