BAC Information

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BAC

Clone NameMSMg01-391A21
Chromosome9 (Build37)
Map Location 72,554,733 - 72,555,135
singlet/doubletsinglet
Overlap geneNedd4
Upstream geneCgnl1, Tcf12, EG666001, LOC665959, EG665964, LOC665970, Suhw4, LOC100041760, Mns1, LOC666007, Tex9, 4930509E16Rik, Rfxdc2, EG639396
Downstream genePrtg, LOC100040694, Pygo1, Dyx1c1, EG546143, Ccpg1, LOC100041896, Pigb, Rab27a, 2410004A20Rik, BC003885, EG436081, Unc13c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-391A21.T7 (MSMg01no391_a21.b1)MSMg01-391A21.TJ (MSMg01no391_a21.g1)
ACCAG492920AG492921
length808778
length of high quality
(start - end)
392 (68 - 459)483 (72 - 554)
definitionCHROMAT_FILE: MSMg01no391_a21.b1 PHD_FILE: MSMg01no391_a21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:09 2005CHROMAT_FILE: MSMg01no391_a21.g1 PHD_FILE: MSMg01no391_a21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCGGCCGCTATACGACTCCTATAGTTCCAGGATCCGCGGAATTCTCGTCT
AGTTTAGAATATCCTTCAAAATTAAAAGGAAAACAAGAGGCTTATGGCGG
ATGATAAGAGACAAGATTGCCGTCGGTGGGCTGGTAGGACATGTGGGAGG
AAGCACTGCACAAGGTGAAAGGAGCGAAGGTCAGGTTCAAAGAGGGAAAG
AGCATCAAAGTCACTAGCTGTAGGCTGGGCAGCAGCTGAGTGGGTGAAAG
CATTTGCTCTACAAGCTATAGGCCATGAGTTCAAAGCCGAGAAGTAACAC
AAAAGCTGGAGAGATTGCTCAGCAATTCCAAGGGGCCTGAGGGTTTGATT
CCCAGCATTCACATGGTAGCAACAACGACTGAGATTCCAAGTCCAGAGGG
TCCTATGCCCTCTTCCAGCTTCCTGCTCCTTTTGTAGAAGACCTGGATTA
AGTTCCTAGCACCCGAGCCTGCCCATGTTCCCATTTGTACCTGTAACCCC
AGTTCTAGAGAATCTGACACTCTCCCCCCCATACCCTACGACAAATAATT
GAAAATAAATTAAGATTTTTTTAAAAGCTTTGGACTACCCATTCCCCCCA
AGGTTACCCCAAACTGGAAGGGGGGGGGATTCCCCGGGGGGGAGAACCTG
CTTAAGCTTGGAACACGGACTTTTTTGAACCCCGGGGGTTTCCCCTCACC
CCCCCCTCAAATTTTAAAACAAAACTTTCCTTTTCTTTTTTCGCCCCTCC
CCGTTTTCCCCCCGCCCCCCGGTCTCGTCGCCACAAACCTAACCCCCCCC
GCTCCCCN
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAGTATTTTATGGAAGAAATTCCAAGACAG
TATTAGTATCAGGCTGTAACATGGGTTTTGCTCATTGCATTTACACAGAT
TTATAGTGAATAAAAGTAGAAAATGAAGCAGCAGGATATGAAAATGTACA
GTTTTTCAAGGAAAGGAAAAATCATATTTAGAGATGAGCCGTACAGATGC
AGTGACTGTTAACTTTTAAAGAGATTAATACCATTAGAGAAACTGAGCAC
TTTGTATTGTCTAAACAGAAAGGTAGCTTGATGGTGAGGTCCCATCAAAC
CAAAGCTCAGAGATGTAAGCAAAACTAAAAATGTATTTGAAAAACTTTAG
AGTACGGGGAGGAAGGACTGAAGGGGTTAAGAGATGACTCAGCAGTTAAC
ATACTCCTCTTGCAGAGCAGTGGCCTAGCTGGAGTTCAGTTCCTCCCATC
AACAGGAGGTTCACAGTGGCCTGTACCTCAAGCTCCAGGAGATCTAACTT
CCTCTTCTCAACTTTGTAGATATCTGCACCTGTGCATATGCCCACACCTA
AACATGCAATCTAAATAAATAAATGGTGCCTAAGAAGATACAGCTTCTAG
AGCATATTTGCTGGGGATTTTTTAAAATGCCCAAGCAAGTGTTTCTCCCC
TACAACCCCTTCGTTTCCCAAGTCCTTGACTTTCGGAAACCGCCCCCCTC
CCCAATCTCATTCCCCACCCTTCTTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no391_a21.b1 MSMg01no391_a21.b1 CHROMAT_FILE:
MSMg01no391_a21.b1 PHD_FILE: MSMg01no391_a21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:35:09 2005
         (392 letters)



>mm_chr9_72554586_72555377
          Length = 792

 Score =  687 bits (355), Expect = 0.0
 Identities = 386/403 (95%), Gaps = 11/403 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaattaaaaggaaaacaagaggcttatggcggatgataagagacaagattgccgtcggt 60
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 550 aaaattaaaaggaaaacaagaggcttatggcggatgacaagagacaagattgccgtcggt 491

                                                                       
Query: 61  gggctggtaggacatgtgggaggaagcactgcacaaggtgaa-----------aggagcg 109
           |||||||||||||||||||||||||||||||||||| |||||           |||||||
Sbjct: 490 gggctggtaggacatgtgggaggaagcactgcacaaagtgaaaggaaaggcataggagcg 431

                                                                       
Query: 110 aaggtcaggttcaaagagggaaagagcatcaaagtcactagctgtaggctgggcagcagc 169
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 aaggtcaggttcaaagagggaaagagcatcaaagtcactagctgtaggctgggcagcagc 371

                                                                       
Query: 170 tgagtgggtgaaagcatttgctctacaagctataggccatgagttcaaagccgagaagta 229
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 370 tgagtgggtgaaagcatttgctctacaagctataggccatgagttcaaagccgagaacta 311

                                                                       
Query: 230 acacaaaagctggagagattgctcagcaattccaaggggcctgagggtttgattcccagc 289
           |||||||||||| ||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 310 acacaaaagctgaagagattgctcagcaattcaaaagggcctgagggtttgattcccagc 251

                                                                       
Query: 290 attcacatggtagcaacaacgactgagattccaagtccagagggtcctatgccctcttcc 349
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 attcacatggtagcaacaacgactgagattccaagtccagagggtcctatgccctcttcc 191

                                                      
Query: 350 agcttcctgctccttttgtagaagacctggattaagttcctag 392
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 agcttcctgctccttttgtagaagacctggattaagttcctag 148


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 392
Length of database: 792
Length adjustment: 9
Effective length of query: 383
Effective length of database: 783
Effective search space:   299889
Effective search space used:   299889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)