BAC Information

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BAC

Clone NameMSMg01-391I07
Chromosome9 (Build37)
Map Location 70,471,999 - 70,472,243
singlet/doubletsinglet
Overlap geneB230380D07Rik
Upstream geneFoxb1, Bnip2, LOC624164, Gtf2a2, Gcnt3, 6430514L14Rik, Myo1e, Ccnb2, Rnf111, Sltm
Downstream geneAdam10, Cycs-ps1, Lipc, LOC100041622, LOC100041628, Aqp9, 1700020I22Rik, LOC100041660, Aldh1a2, Grinl1a, AA407270, LOC547043, LOC100040537
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-391I07.T7 (MSMg01no391_i07.b1)MSMg01-391I07.TJ (MSMg01no391_i07.g1)
ACCAG493271AG493272
length756768
length of high quality
(start - end)
247 (71 - 317)248 (73 - 320)
definitionCHROMAT_FILE: MSMg01no391_i07.b1 PHD_FILE: MSMg01no391_i07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:46 2005CHROMAT_FILE: MSMg01no391_i07.g1 PHD_FILE: MSMg01no391_i07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGAGACACCGCGGAATTC
ATGAAATTTCCCTTGACAGAGAAGTTGCTGGATAGCATCCTTCCCATGCC
AGGCTGCAATTCCACAAGGGTGGGAGTTGGTAGCACACTAAATCCAATGA
GCACAGGAAAGTCAATCCCTTCATTACTTCTCTTTTTCCCCCTAACCTGA
GAGTATATGTCATTGCTTCTCTGACTTTATCACCTTGGGGTAATGGGCAG
GTGTATATACATAGTGTGGACAGTTTGGGAAGAACATCTTGGTAAAAATG
AGAAAGGGTCACCTGTTTCTTCTGTGCATAGAACTTTTGGGTACATATAC
CATGCATGTTTATTATAAAGTCTTCGATATGACAATTCGATAGCAGTGAA
ACTCTAAATGACCCCCCCCCCACCAAGTAATAAATCATATATGAAGTTTA
TCATAGATTAACAAGCTAAACTAGCTTTCTGATAATAAGAAATAGCAATA
TGCACGCGGTCTTGAAACAACGCCAGTCATGACTTGTGTAACATTCCCCA
GCTCCCATATAAGTGAGCGAGCCCCCGTGCCATTTTTCCCCACAATTTCG
CCACCCCTCTTCCCCGTGGTCCCTGACCCATCCGGCCCCCTTTCCCCCTA
TAGGCCCTCCTCCCAACTCTCCCTTTGCACCCACCCTCAAGTCCCCCCAA
CGCCCATTTTTAGCCCCCCACCCTCTTTCCCCTCCCCCCGTCCCCCCCCT
TTCTCN
NCCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTTCGCGAACTTCACCCAAGAGGAGNAGACGGCAGGAAAT
AATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTC
AAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATA
GATAAACCCTTAGCTAGACTCATTAAAGGGCACAGGGACAAAATCATAAT
TAATAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAA
TCCAAAACACCATCAGATCTTTTGNATTTAGGCTATATTCAACAAAACTG
GAAAACCTGGACGAAATGGACAAATTTCTAGACAGATACCAGGTACCAAA
GTTAAATCAGGATCAAGCCAAAGATCTAAACAGTCCCATATCCCCTAAAG
AAATAGAAGCAGTCATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGAAAA
GATGAGTTTAGTGCAGAGTTCTACCAGACCTTCAAAGAAGATCTAATCCC
AGTTCTGCACAAACCATTCCACAAAATAGAAGGAGAGGGAACTCTACCCA
ACTCATTCTATGAAGCCCCAATTACTCTGATATCTAACCCCCCGAAAGAT
TCTTTTTTTGATTGAGAACTTCCCGACCACTTTCCCCTCTTGAATATCGC
AAGGCCAAAACCTCCCTACAAAATCCCCCCCCAACCCGAATCCCAACAAA
CCACTTTAAGGCATTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no391_i07.b1 MSMg01no391_i07.b1 CHROMAT_FILE:
MSMg01no391_i07.b1 PHD_FILE: MSMg01no391_i07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:35:46 2005
         (247 letters)



>mm_chr9_70471799_70472445
          Length = 647

 Score =  427 bits (221), Expect = e-124
 Identities = 239/245 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaagttgctggatagcatccttcccatgccaggctgcaattccacaagggtgggagttgg 60
           |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gaagctgctggacagcatccttcccatgccaggctgcaattccacaagggtgggagttgg 386

                                                                       
Query: 61  tagcacactaaatccaatgagcacaggaaagtcaatcccttcattacttctctttttccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 385 tagcacactaaatccaatgagcacaggaaagtcaatcccttcattacttttctttttccc 326

                                                                       
Query: 121 cctaacctgagagtatatgtcattgcttctctgactttatcaccttggggtaatgggcag 180
           |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cctaacctgacagtatacgtcattgcttctctgactttatcaccttggggtaatgggcag 266

                                                                       
Query: 181 gtgtatatacatagtgtggacagtttgggaagaacatcttggtaaaaatgagaaagggtc 240
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 265 gtgtatatacatagtgtggacagtttgggaagaatatcttggtaaaaatgagaaagggtc 206

                
Query: 241 acctg 245
           |||||
Sbjct: 205 acctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)