BAC Information

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BAC

Clone NameMSMg01-392E06
Chromosome9 (Build37)
Map Location 9,288,601 - 9,289,080
singlet/doubletsinglet
Overlap genenone
Upstream geneTrpc6, Pgr, 9030420J04Rik
Downstream geneCntn5, LOC665154
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-392E06.T7 (MSMg01no392_e06.b1)MSMg01-392E06.TJ (MSMg01no392_e06.g1)
ACCAG493840AG493841
length758754
length of high quality
(start - end)
484 (50 - 533)430 (71 - 500)
definitionCHROMAT_FILE: MSMg01no392_e06.b1 PHD_FILE: MSMg01no392_e06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:44 2005CHROMAT_FILE: MSMg01no392_e06.g1 PHD_FILE: MSMg01no392_e06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCTTCTATAGCTACATGGAACATGTATTGTGATTTGGGAGTT
GAGCAGATACCACCTGTACCAAGCTGTTTCGACTGTGATATTGAAACTAA
CTCAGTTAAAATCCTTATCTTCCCTTTTTCATCTAGAGAATCATCAAGAC
TACCAACAGTCTAGAATTAAATTCATTCAGGTGTAGAGATTCTGTCCTAC
CCTCTCACTGATATGAAATACCTATGCAGTGGTCAGAATCTTAAACATGG
TGCCAGCAGATTTTCAGAGACTTTCCCTTTGTGTTTAGAATGGTGTATAT
CTGTTGGGTGTCATGAGGAGGGTTCCAGGTGGTGTGAGGGCTCACTCAGG
TCAATTCTAGTGTCATCTGTCTCTTGAACCCCACAACCTTTACTGAAATG
CTGCTGAGCAAAGTGGTGCACTATATTCAGAGCAAGGACTTCTGGGATTA
TCTCATGGGTATGCAATTTTGGGGTGTACCAACTGGGGACTCGCCATTGC
TGCTATCAATGATGTGAAGAAGTATCCAGAGTGTAATACCACTTGGAACA
TGGCTTATGGTTGCATGCCTGCAAACCATGAAGTAGCTCTGTTTCTCTCC
GGAGGACCACTCCCTCCATTATGACATGAATAGCACGTTTTCCGCCAAGC
ACGGTTTCCAAAACCTCTTTCAGGGGAACGCACTCTGGGCCCCGGGATCC
CACGGTCC
GAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCTGGTCCCCACCTACCATCTCAGCATAGG
AATGATTTGACTAAAAATGTGTGCTGCCAAGTCCAGCTTTACTCACATGT
GTTGGAAATCCAAACTCAAGCAGTCCCATGTGTGCAGCAAGTGCTTCACC
CACTGAGATATCACCCTAGCCCGAATTTAACTGTTAAATTCCATACTCTG
AATGCTCAGAGACAATGTAGCAAAGGCAAAACCAAAATGCTGATGACCCA
TGTCTCTGGCATTATTCTTTTTTAAAATCATGTTTCCAGACAGGAATGAC
AAAAGAAGAAAAAACCACCCTCAGTGTGGGCATTGTCACCCCAGGGCTTG
AAGTCAGGAACTGAATAAATAGGCAAAAGGAAAGACCATGGGAAGTGTCA
CTTCCATGTATATTAGATTTGTTCCATCTCCCCCTACCATGCTCCATGGT
TTTATTCTGCGAGAGCAAAACTGAAGGATGAAACCGGTCCTCACTACACG
AACTGAAGAAGGAACTGGCCAACACCCCTGAATCTTTCCCAAGGTCTTTA
TATTCATCCTCCGCATCCGAACCTATTACTTTATACCTGAACTCCCCAGA
TTCTTATTCTTTCTCCTCCCGTTTATATACCCCCCCCCCTCTTCATATTC
TTTCCTACCTCATATTCCCCCCCCCTTCCCTCTTACTTCCTTCTTATTTC
CCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no392_e06.b1 MSMg01no392_e06.b1 CHROMAT_FILE:
MSMg01no392_e06.b1 PHD_FILE: MSMg01no392_e06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:36:44 2005
         (484 letters)



>mm_chr9_9288397_9289280
          Length = 884

 Score =  905 bits (468), Expect = 0.0
 Identities = 477/480 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccttctatagctacatggaacatgtattgtgatttgggagttgagcagataccac 64
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gaattccttctaaagctacatggaacatgtattgtgatttgggagttgagcagataccac 625

                                                                       
Query: 65  ctgtaccaagctgtttcgactgtgatattgaaactaactcagttaaaatccttatcttcc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ctgtaccaagctgtttcgactgtgatattgaaactaactcagttaaaatccttatcttcc 565

                                                                       
Query: 125 ctttttcatctagagaatcatcaagactaccaacagtctagaattaaattcattcaggtg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ctttttcatctagagaatcatcaagactaccaacagtctagaattaaattcattcaggtg 505

                                                                       
Query: 185 tagagattctgtcctaccctctcactgatatgaaatacctatgcagtggtcagaatctta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tagagattctgtcctaccctctcactgatatgaaatacctatgcagtggtcagaatctta 445

                                                                       
Query: 245 aacatggtgccagcagattttcagagactttccctttgtgtttagaatggtgtatatctg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aacatggtgccagcagattttcagagactttccctttgtgtttagaatggtgtatatctg 385

                                                                       
Query: 305 ttgggtgtcatgaggagggttccaggtggtgtgagggctcactcaggtcaattctagtgt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ttgggtgtcatgaggagggttccaggtggtgtgagggctcactcaggtcaattctagtgt 325

                                                                       
Query: 365 catctgtctcttgaaccccacaacctttactgaaatgctgctgagcaaagtggtgcacta 424
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 324 catctgtctcttgaaccccacaacttttactgaaatgctgctgagcaaagtggtgcacta 265

                                                                       
Query: 425 tattcagagcaaggacttctgggattatctcatgggtatgcaattttggggtgtaccaac 484
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tattcagagcaaggaattctgggattatctcatgggtatgcaattttggggtgtaccaac 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 884
Length adjustment: 10
Effective length of query: 474
Effective length of database: 874
Effective search space:   414276
Effective search space used:   414276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)