CCCTCTAACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCATTCTTTTTGTTGTTGTTGTTTACCTACTGTGAATTAAAG
AATAATTGCTCACTTTTATAGAACTTCAGTTAAACATCAAACAATGCAAG
TAACTGGAGAAGAGCCTTCCCTCAATTAAAAATTATTTGGTTAGCTCTCT
GTACTAACATCCACCTTTTCTTGCTAAGAATGGTAGCAGTGGAGAGATGT
CTTCCACAGGCTCATGTGCTACATGACTGTCTGGTTCCCAGCAAGTGACA
CAGTTTTGGCAGGTCTGGAAAGTCCAAGAAGTGATGGCTATCTGGAAGTA
GTAGATCACTAGAAGGAGTGACATTGAACATTATGCCTGGTCCCCAGTTC
TCTTGATGCTCCTTAACAAGCCACATGCTCTTGCTTCCATGATGCTACCC
AAGAGCCAGGAGCAGAGCATCTACGGACAAAAGTCTCAATAAATCTGTCA
TCCTTGAGGTTGTTCTCTCAAGTATTAGGTCACAATGAGGCACAGAGAAG
GATCTGTGTGTTAATTTGTGTCTCTCCTGTGAGAAACTCTGTGCAGTAAC
AAAAGCCTGTGGGACAGACCCAGGTTCTTCATTTCCTTATGTGATGGCTT
ACATTAACTGGGTTTTTTATTTTTCCATCTTTATTTTAATTTTTAATTTC
ATTAACCCCTTCCCCTTGCAAAGAACTACTTGCCCTCGTTCTCCCTT

TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTATCTGAGAAATACTGAATGGCTGAGAAG
CACCTAAAGAAGTGTTCAACATCCTTAGTCATCAGGGAAATGCAAATCAA
AACAACCCTGAGATTCCACCTCATACCAGTCAGGATGGCTAAGATAAAAA
ACTCAGGTGATAGCAGATGTTGGAGAGGATGTAGAGAAAGAGGAACACTC
CTTCATTGCTGGTGGAATTGCATGCTGGTACAACCACTCTGGAAATCAGT
CTGGTGGTTCCTCAGAAAACTGGTATGTAGTACTACCAGAGGACCCAGCA
ATACCACTCCTGGGCATATACCCAGAAGCTCAGAGAACATCACAGAAGAT
AGAAAGGAAGAAAGAAAGAGCAGGATGCTGGGGAAGAGTTCAGGGAAATG
CTGGCTGGTAGACATGACTTGGCCATTGAGATAATGGACTCAGCGTAGCT
ATGACGTCCTGCATAACACCTGCCGAGGATTATTCCCGTAAAACCAGCCC
ATATTTTAGCATGTATTATTACTTGGCACCCGCAAGGTATTTCACTTAAA
TTGTATTAACAGGCGGCGNCCGCGGTCGTCCTTTTTTTTTTCCCTAACTC
CATCTATGTCCTCTTTTTTCTCCCCTCTTTTTTCCTCCCCCCCCCACTTT
GTCCTTTCTCTCGCCCAGTTCCATTTCGCCTCCCCTCCCCCCTTCTTCTC
CTTCTTTTTTCCTTG

Query= MSMg01no392_f02.b1 MSMg01no392_f02.b1 CHROMAT_FILE:
MSMg01no392_f02.b1 PHD_FILE: MSMg01no392_f02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:36:48 2005
         (570 letters)



>mm_chr9_80509099_80510065
          Length = 967

 Score =  857 bits (443), Expect = 0.0
 Identities = 484/499 (96%), Gaps = 3/499 (0%)
 Strand = Plus / Minus

                                                                       
Query: 72  cttcagttaaacatcaaacaatgcaagtaactggagaagagccttccctcaattaaaaat 131
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 967 cttcaggtaaacatcaaacaatgcaagtaactggagaagagccttccctcaattaaaaat 908

                                                                       
Query: 132 tatttggttagctctctgtactaacatccaccttttcttgctaagaatggtagcagtgga 191
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 907 tatttggttagctctctgtactaacatccaccttttcttgctaagaatggtagcagtgga 848

                                                                       
Query: 192 gagatgtcttccacaggctcatgtgctacatgactgtctggttcccagcaagtgacacag 251
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 847 gagatgtcttccacaggctcatgtgctacatgactgtctggttcccagcaagtgacacag 788

                                                                       
Query: 252 ttttggcaggtctggaaagtccaagaagtgatggctatctggaagtagtagatcactaga 311
           ||||||  |||||||||| ||||||||||||||||||||||||   ||||||||||||||
Sbjct: 787 ttttggtgggtctggaaactccaagaagtgatggctatctgga---agtagatcactaga 731

                                                                       
Query: 312 aggagtgacattgaacattatgcctggtccccagttctcttgatgctccttaacaagcca 371
           ||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 730 aggggtgacattgaacattatgcctggtccccagttctcttgacgctccttaacaagcca 671

                                                                       
Query: 372 catgctcttgcttccatgatgctacccaagagccaggagcagagcatctacggacaaaag 431
           || |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 670 cacgctcttgcttccatgatgctacccgagagccaggagcagagcatctacggacaaaag 611

                                                                       
Query: 432 tctcaataaatctgtcatccttgaggttgttctctcaagtattaggtcacaatgaggcac 491
           ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 tctgaataaacctgtcatccttgaggttgttctctcaagtattaggtcacaatgaggcac 551

                                                                       
Query: 492 agagaaggatctgtgtgttaatttgtgtctctcctgtgagaaactctgtgcagtaacaaa 551
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 550 agagaaggatctgtgtgttaatttgtgtctctcctgtgagaaactctgtacagtaacaaa 491

                              
Query: 552 agcctgtgggacagaccca 570
            ||||||||||||||||||
Sbjct: 490 ggcctgtgggacagaccca 472


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 967
Length adjustment: 10
Effective length of query: 560
Effective length of database: 957
Effective search space:   535920
Effective search space used:   535920
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)