BAC Information

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BAC

Clone NameMSMg01-392N07
Chromosome9 (Build37)
Map Location 41,495,278 - 41,673,957
singlet/doubletdoublet
Overlap gene6720432D03Rik
Upstream gene9030425E11Rik, LOC100043076, LOC100043071, Hspa8, Bsx, 4931429I11Rik, Crtam, 2810457I06Rik, LOC628495, LOC100042464, EG667566
Downstream geneSorl1, Sc5d, Tecta, Tbcel, Grik4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-392N07.T7 (MSMg01no392_n07.b1)MSMg01-392N07.TJ (MSMg01no392_n07.g1)
ACCAG494273AG494274
length781765
length of high quality
(start - end)
244 (72 - 315)383 (73 - 455)
definitionCHROMAT_FILE: MSMg01no392_n07.b1 PHD_FILE: MSMg01no392_n07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:37:30 2005CHROMAT_FILE: MSMg01no392_n07.g1 PHD_FILE: MSMg01no392_n07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:37:30 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,673,714 - 41,673,957)(41,495,278 - 41,495,660)
sequence
CCCCCCTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGAGGATC
CGCGGAATTCTCTTATCTCCACCTTCCCAATGGTAGGACTATGAGGATGT
ATCACCATGCCCCGCTTTGTATGTGGGTGCTGGTACTGAACACAAGTCTT
CTCCAGCAAGCACTTTCCTCATCAAATTGTCTCCTGGTCCCTTCTCGTAG
GTTTTCCAATTTCTGGGAGTTGTCATGGTGTTGGTCCATCATGCCTGCAG
TCCCAGGCAAGAAGACAGAGAAAGTGTTGGGGGTGTTTGGTCATGCTGGT
AGGTGATGAGACTTCTGTTTTTTGAGTAGATAGGTGACATACCACTTTCC
CACAGGTTCTAGACCAGGGGCACATCAGTTCAGCATGGACAGCTGGTCTC
TGGAGCTTCACTCCCCCCCCGCAGTAAAGCTGTGTTCCTAGTGCGCACCT
TTCCATATATATGATTCTTCAACTACAGCACAAAACCACCTTGACAAGCT
CTTGCTGCCTGCGCTGCATTCCCTTGCCGCGAGACCCCTAAAACGGCCCC
GCCACACTAACTGCTCCCACTCCCCCTGGCCTCACTCTTCCTTGGCCCCC
CTCTTATTTTTGAATCCTCCCCCCTCTCTTCTCGCCTAAACAACCCCCCC
CCCGCCACGTTCCCTGTGTAATCCCCCCCCTCCCCCACCCTTTTCCTCCC
TTCTTTCATCGTTCCTATCTTCTCCCTCCCCCCTGCTCCTGTCACCCCGG
TATACTCCTCTTTTCCCCCCCCCCCTCCCCG
TGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTCTTTTTTTTTTTTCTTTCTGTGAATG
GCCTTTGAAGAGTTTGTACTGAACAAAGACTCAAGCTCAAAAGACTCTCA
ACAACAACAAATGTACTAAAATTGTGTACTTTCAAGGAAAGCTGAGGTGA
ATGTAGAAACAGAGACCATCCAACATTAGCCTTTCTGATCATTTCATAGT
TTCGGTTTTTATAACCCTCATTTAGAATGCTGCATCCTCTAACTATTTCA
TCTGAGGGTAGCTAGCTGCCAGTTTAAGGGCATTATCACTGTTTATAGTC
TCACAGAGTGCCCATAAACATTGGTATCTCAGCAAAATTATCACCCAGAT
TATGTAGTTTTAGCACAACGATAGGTTTGTTAAAATAGACAAGGGTAAAC
CAGCAATATCTTGTCCCAATTAAAACAGGAGTATATGATGCACCCACTAT
TGATGCTGCCTCCTGTATCTAGGGAAAGCGCACACAGTATCCACATCCAT
TCTATGGAGTTACCCCAGCTGAGCAAAGTTCTACTTTACTGACTAACACG
GACGCCGCGAACCCGCATCCCTTCCTCTTCTGTGCATCCCCCCCTTTCGC
TGACCTCCCCCCGCCCCCTTAAGACCCATCTTTCCATCCTGCAATCGCCC
TCCTCCCTGTCTGCCTCCCATTTCTCCTTCTGCGCCTATACCCACCCGTT
CCCTTCTTCCTCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no392_n07.b1 MSMg01no392_n07.b1 CHROMAT_FILE:
MSMg01no392_n07.b1 PHD_FILE: MSMg01no392_n07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:37:30 2005
         (244 letters)



>mm_chr9_41673401_41674044
          Length = 644

 Score =  472 bits (244), Expect = e-138
 Identities = 244/244 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccttcccaatggtaggactatgaggatgtatcaccatgccccgctttgtatgtgggtgct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 ccttcccaatggtaggactatgaggatgtatcaccatgccccgctttgtatgtgggtgct 498

                                                                       
Query: 61  ggtactgaacacaagtcttctccagcaagcactttcctcatcaaattgtctcctggtccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 ggtactgaacacaagtcttctccagcaagcactttcctcatcaaattgtctcctggtccc 438

                                                                       
Query: 121 ttctcgtaggttttccaatttctgggagttgtcatggtgttggtccatcatgcctgcagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 ttctcgtaggttttccaatttctgggagttgtcatggtgttggtccatcatgcctgcagt 378

                                                                       
Query: 181 cccaggcaagaagacagagaaagtgttgggggtgtttggtcatgctggtaggtgatgaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 cccaggcaagaagacagagaaagtgttgggggtgtttggtcatgctggtaggtgatgaga 318

               
Query: 241 cttc 244
           ||||
Sbjct: 317 cttc 314


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no392_n07.g1 MSMg01no392_n07.g1 CHROMAT_FILE:
MSMg01no392_n07.g1 PHD_FILE: MSMg01no392_n07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:37:30 2005
         (383 letters)



>mm_chr9_41495078_41495860
          Length = 783

 Score =  694 bits (359), Expect = 0.0
 Identities = 377/383 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctcttttttttttttctttctgtgaatggcctttgaagagtttgtactgaacaaagactc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctcttttttttttttctttctgtgaatggcctttgaagagtttgtactgaacaaagactc 260

                                                                       
Query: 61  aagctcaaaagactctcaacaacaacaaatgtactaaaattgtgtactttcaaggaaagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagctcaaaagactctcaacaacaacaaatgtactaaaattgtgtactttcaaggaaagc 320

                                                                       
Query: 121 tgaggtgaatgtagaaacagagaccatccaacattagcctttctgatcatttcatagttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgaggtgaatgtagaaacagagaccatccaacattagcctttctgatcatttcatagttt 380

                                                                       
Query: 181 cggtttttataaccctcatttagaatgctgcatcctctaactatttcatctgagggtagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cggtttttataaccctcatttagaatgctgcatcctctaactatttcatctgagggtagc 440

                                                                       
Query: 241 tagctgccagtttaagggcattatcactgtttatagtctcacagagtgcccataaacatt 300
           ||||||||||   ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 441 tagctgccagcagaagggcattatcactgtttatagtctcacggagtgcccataaacatt 500

                                                                       
Query: 301 ggtatctcagcaaaattatcacccagattatgtagttttagcacaacgataggtttgtta 360
           ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct: 501 ggtatctcagcaaaattatcacccagattatgtagttttagcagaaggataggtttgtta 560

                                  
Query: 361 aaatagacaagggtaaaccagca 383
           |||||||||||||||||||||||
Sbjct: 561 aaatagacaagggtaaaccagca 583


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 383
Length of database: 783
Length adjustment: 9
Effective length of query: 374
Effective length of database: 774
Effective search space:   289476
Effective search space used:   289476
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)