MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-393A05
Chromosome	9 (Build37)
Map Location	63,765,171 - 63,765,655
singlet/doublet	singlet
Overlap gene	none
Upstream gene	Pias1, LOC100039976, Ppia-ps9_818.1, Lbxcor1, Map2k5, 2300009A05Rik, Iqch, LOC621763, 2310007F21Rik, Smad3, LOC100040009
Downstream gene	Smad6, 2600006L11Rik, Lctl, Zwilch, Rpl4, Snapc5, Map2k1, Uchl4, Tipin, Dis3l, Megf11, Rab11a, AI115600, F730015K02Rik
Link	Open Mouse BAC browser

Click to get alignment info.

name	Pias1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:56469 MGI:1913125
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100039976 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039976
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins pseudo : _no_value

name	Ppia-ps9_818.1 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:606730
definition	note : peptidylprolyl isomerase A (Ppia) pseudogene 9_818.1 pseudo : _no_value

name	Lbxcor1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:207667 MGI:2443473
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Map2k5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:23938 MGI:1346345
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	2300009A05Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:69478 MGI:1916728
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 mRNAs, 30 ESTs, 2 Proteins

name	Iqch (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:78250 MGI:1925500
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 17 ESTs, 2 Proteins

name	LOC621763 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:621763
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 46 ESTs, 3 Proteins pseudo : _no_value

name	2310007F21Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66939 MGI:1914189
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Smad3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:17127 MGI:1201674
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100040009 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040009
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins pseudo : _no_value

name	Smad6 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:17130 MGI:1336883
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	2600006L11Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:76814 MGI:1924064
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA

name	Lctl (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:235435 MGI:2183549
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Zwilch (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:68014 MGI:1915264
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rpl4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67891 MGI:1915141
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Snapc5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:330959 MGI:1914282
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Map2k1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:26395 MGI:1346866
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Uchl4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:93841 MGI:1890440
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tipin (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66131 MGI:1921571
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Dis3l (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:213550 MGI:2143272
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Megf11 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:214058 MGI:1920951
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rab11a (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:53869 MGI:1858202
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	AI115600 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:102442 MGI:2142979
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 mRNAs, 76 ESTs, 2 Proteins

name	F730015K02Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:319526 MGI:2442199
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs

name	Pias1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142361261 GeneID:56469 MGI:1913125
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : protein inhibitor of activated STAT 1 transcript_id : NM_019663.3

name	Lbxcor1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142383959 GeneID:207667 MGI:2443473
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ladybird homeobox 1 homolog (Drosophila) corepressor 1 transcript_id : NM_172446.2

name	Map2k5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130017 GeneID:23938 MGI:1346345
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : mitogen activated protein kinase kinase 5 transcript_id : NM_011840.2

name	2300009A05Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94386166 GeneID:69478 MGI:1916728
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 14 ESTs, 1 Protein product : RIKEN cDNA 2300009A05 gene, transcript variant 3 transcript_id : XM_898537.2

name	2300009A05Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94386167 GeneID:69478 MGI:1916728
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 16 ESTs, 1 Protein product : RIKEN cDNA 2300009A05 gene, transcript variant 1 transcript_id : XM_204313.6

name	Iqch (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94386168 GeneID:78250 MGI:1925500
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 17 ESTs, 2 Proteins product : IQ motif containing H, transcript variant 1 transcript_id : XM_134960.5

name	Iqch (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149260023 GeneID:78250 MGI:1925500
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 13 ESTs, 1 Protein product : IQ motif containing H transcript_id : XM_001475908.1

name	2310007F21Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802812 GeneID:66939 MGI:1914189
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 2310007F21 gene transcript_id : NM_025857.2

name	Smad3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141801800 GeneID:17127 MGI:1201674
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : MAD homolog 3 (Drosophila) transcript_id : NM_016769.3

name	Smad6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31560672 GeneID:17130 MGI:1336883
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : MAD homolog 6 (Drosophila) transcript_id : NM_008542.2

name	2600006L11Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149260001 GeneID:76814 MGI:1924064
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 2600006L11 gene transcript_id : XM_001473989.1

name	Lctl (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802015 GeneID:235435 MGI:2183549
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : lactase-like transcript_id : NM_145835.2

name	Zwilch (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:71143133 GeneID:68014 MGI:1915264
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Zwilch, kinetochore associated, homolog (Drosophila) transcript_id : NM_026507.3

name	Rpl4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142374582 GeneID:67891 MGI:1915141
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ribosomal protein L4 transcript_id : NM_024212.3

name	Snapc5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:113681193 GeneID:330959 MGI:1914282
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : small nuclear RNA activating complex, polypeptide 5 transcript_id : NM_183316.2

name	Map2k1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142372689 GeneID:26395 MGI:1346866
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : mitogen activated protein kinase kinase 1 transcript_id : NM_008927.3

name	Uchl4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:15809025 GeneID:93841 MGI:1890440
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ubiquitin carboxyl-terminal esterase L4 transcript_id : NM_033607.1

name	Tipin (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142385283 GeneID:66131 MGI:1921571
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : timeless interacting protein transcript_id : NM_025372.2

name	Dis3l (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:47604967 GeneID:213550 MGI:2143272
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : DIS3 mitotic control homolog (S. cerevisiae)-like transcript_id : NM_001001295.1

name	Dis3l (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130012 GeneID:213550 MGI:2143272
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : DIS3 mitotic control homolog (S. cerevisiae)-like transcript_id : NM_172519.2

name	Megf11 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142362961 GeneID:214058 MGI:1920951
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : multiple EGF-like-domains 11 transcript_id : NM_172522.2

name	Rab11a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142373351 GeneID:53869 MGI:1858202
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RAB11a, member RAS oncogene family transcript_id : NM_017382.4

name	AI115600 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149260033 GeneID:102442 MGI:2142979
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 mRNAs, 76 ESTs, 2 Proteins product : expressed sequence AI115600 transcript_id : XM_001476259.1

name	F730015K02Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149260035 GeneID:319526 MGI:2442199
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs product : RIKEN cDNA F730015K02 gene transcript_id : XM_001487795.1

name	Pias1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31543478 GeneID:56469 MGI:1913125
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0003714 - transcription corepressor activity [Evidence ISS]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0007259 - JAK-STAT cascade [Evidence ISS]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA]; GO:0006512 - ubiquitin cycle [Evidence IEA] codon_start : 1 note : DEAD/H (Asp-Glu-Ala-Asp/His) box binding protein 1 product : protein inhibitor of activated STAT 1 protein_id : NP_062637.2

name	Lbxcor1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27369603 CCDS:CCDS23268.1 GeneID:207667 MGI:2443473
definition	GO_component : GO:0005634 - nucleus [Evidence IDA]; GO:0005667 - transcription factor complex [Evidence IDA] GO_function : GO:0005515 - protein binding [Evidence IPI]; GO:0003714 - transcription corepressor activity [Evidence IDA] GO_process : GO:0016481 - negative regulation of transcription [Evidence IDA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 exception : mismatches in translation product : transcriptional corepressor Corl1 protein_id : NP_766034.1

name	Map2k5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6754624 CCDS:CCDS23269.1 GeneID:23938 MGI:1346345
definition	GO_component : GO:0005819 - spindle [Evidence IDA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0004674 - protein serine/threonine kinase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0007507 - heart development [Evidence IMP]; GO:0000165 - MAPKKK cascade [Evidence IMP] codon_start : 1 note : MAPK/ERK kinese 5; MAPK/ERK kinase 5 product : mitogen activated protein kinase kinase 5 protein_id : NP_035970.1

name	2300009A05Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82930191 GeneID:69478 MGI:1916728
definition	codon_start : 1 product : hypothetical protein LOC69478 isoform 3 protein_id : XP_903630.1

name	2300009A05Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:63589667 GeneID:69478 MGI:1916728
definition	codon_start : 1 product : hypothetical protein LOC69478 isoform 1 protein_id : XP_204313.2

name	Iqch (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149260024 GeneID:78250 MGI:1925500
definition	codon_start : 1 product : IQ motif containing H protein_id : XP_001475958.1

name	Iqch (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:20890410 GeneID:78250 MGI:1925500
definition	codon_start : 1 product : IQ motif containing H isoform 1 protein_id : XP_134960.1

name	2310007F21Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:110625673 CCDS:CCDS23271.1 GeneID:66939 MGI:1914189
definition	GO_process : GO:0015031 - protein transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 product : hypothetical protein LOC66939 protein_id : NP_080133.1

name	Smad3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31543222 CCDS:CCDS23272.1 GeneID:17127 MGI:1201674
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IDA]; GO:0005886 - plasma membrane [Evidence IDA] GO_function : GO:0003690 - double-stranded DNA binding [Evidence IDA]; GO:0005515 - protein binding [Evidence IPI]; GO:0003700 - transcription factor activity [Evidence IDA]; GO:0008134 - transcription factor binding [Evidence IPI]; GO:0016563 - transcriptional activator activity [Evidence IDA] GO_process : GO:0007182 - common-partner SMAD protein phosphorylation [Evidence IEA]; GO:0001707 - mesoderm formation [Evidence IMP]; GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IDA]; GO:0009887 - organ morphogenesis [Evidence IEA]; GO:0048340 - paraxial mesoderm morphogenesis [Evidence IMP]; GO:0045941 - positive regulation of transcription [Evidence IDA]; GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IDA]; GO:0045893 - positive regulation of transcription, DNA-dependent [Evidence IDA]; GO:0051098 - regulation of binding [Evidence IDA]; GO:0050678 - regulation of epithelial cell proliferation [Evidence IMP]; GO:0050776 - regulation of immune response [Evidence IMP]; GO:0016202 - regulation of striated muscle development [Evidence IDA]; GO:0017015 - regulation of transforming growth factor beta receptor signaling pathway [Evidence IDA]; GO:0007183 - SMAD protein heteromerization [Evidence IEA]; GO:0042110 - T cell activation [Evidence IMP]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 exception : mismatches in translation note : Smad 3 product : MAD homolog 3 protein_id : NP_058049.2

name	Smad6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31560673 CCDS:CCDS23273.1 GeneID:17130 MGI:1336883
definition	GO_component : GO:0005622 - intracellular [Evidence IEA] GO_process : GO:0007182 - common-partner SMAD protein phosphorylation [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 exception : mismatches in translation note : Smad 6 product : MAD homolog 6 protein_id : NP_032568.2

name	2600006L11Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149260002 GeneID:76814 MGI:1924064
definition	codon_start : 1 product : hypothetical protein LOC76814 protein_id : XP_001474039.1

name	Lctl (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:22003882 CCDS:CCDS23274.1 GeneID:235435 MGI:2183549
definition	GO_component : GO:0005783 - endoplasmic reticulum [Evidence IDA]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0003824 - catalytic activity [Evidence IEA]; GO:0043169 - cation binding [Evidence IEA] codon_start : 1 note : Klotho-LPH related product : lactase-like protein_id : NP_665834.1

name	Zwilch (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27532956 CCDS:CCDS23275.1 GeneID:68014 MGI:1915264
definition	GO_component : GO:0000776 - kinetochore [Evidence ISS] GO_function : GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 product : Zwilch protein_id : NP_080783.2

name	Rpl4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30794450 GeneID:67891 MGI:1915141
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO:0005840 - ribosome [Evidence IEA] GO_function : GO:0005515 - protein binding [Evidence IPI]; GO:0003735 - structural constituent of ribosome [Evidence IEA] GO_process : GO:0006412 - protein biosynthesis [Evidence IEA] codon_start : 1 product : ribosomal protein L4 protein_id : NP_077174.1

name	Snapc5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:113681194 CCDS:CCDS23276.1 GeneID:330959 MGI:1914282
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_process : GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : small nuclear RNA activating complex, polypeptide 5, 19kDa product : small nuclear RNA activating complex, polypeptide 5 protein_id : NP_899139.2

name	Map2k1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6678794 CCDS:CCDS23277.1 GeneID:26395 MGI:1346866
definition	GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0004708 - MAP kinase kinase activity [Evidence IMP]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0004672 - protein kinase activity [Evidence IEA]; GO:0004674 - protein serine/threonine kinase activity [Evidence IEA]; GO:0004713 - protein-tyrosine kinase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0030216 - keratinocyte differentiation [Evidence IMP]; GO:0030182 - neuron differentiation [Evidence IMP]; GO:0006468 - protein amino acid phosphorylation [Evidence IEA] codon_start : 1 note : protein kinase, mitogen activated, kinase 1, p45; MAP kinase kinase 1 product : mitogen activated protein kinase kinase 1 protein_id : NP_032953.1

name	Uchl4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:15809026 CCDS:CCDS23278.1 GeneID:93841 MGI:1890440
definition	GO_component : GO:0005622 - intracellular [Evidence IEA] GO_function : GO:0008234 - cysteine-type peptidase activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA]; GO:0004221 - ubiquitin thiolesterase activity [Evidence IEA] GO_process : GO:0006512 - ubiquitin cycle [Evidence IEA]; GO:0006511 - ubiquitin-dependent protein catabolism [Evidence IEA] codon_start : 1 product : ubiquitin carboxyl-terminal esterase L4 protein_id : NP_291085.1

name	Tipin (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21313608 CCDS:CCDS23279.1 GeneID:66131 MGI:1921571
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA]; GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 product : timeless-interacting protein protein_id : NP_079648.1

name	Dis3l (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:47604968 CCDS:CCDS23280.1 GeneID:213550 MGI:2143272
definition	GO_function : GO:0004540 - ribonuclease activity [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA] codon_start : 1 product : DIS3 mitotic control homolog (S. cerevisiae)-like protein_id : NP_001001295.1

name	Dis3l (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27369724 CCDS:CCDS23280.1 GeneID:213550 MGI:2143272
definition	GO_function : GO:0004540 - ribonuclease activity [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA] codon_start : 1 product : DIS3 mitotic control homolog (S. cerevisiae)-like protein_id : NP_766107.1

name	Megf11 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27369722 CCDS:CCDS23281.1 GeneID:214058 MGI:1920951
definition	codon_start : 1 product : MEGF11 protein protein_id : NP_766110.1

name	Rab11a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31980840 CCDS:CCDS23282.1 GeneID:53869 MGI:1858202
definition	GO_component : GO:0000178 - exosome (RNase complex) [Evidence IEA]; GO:0005802 - Golgi trans face [Evidence ISS]; GO:0005622 - intracellular [Evidence IEA] GO_function : GO:0005525 - GTP binding [Evidence IEA]; GO:0003924 - GTPase activity [Evidence ISS]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence ISS]; GO:0019905 - syntaxin binding [Evidence ISS] GO_process : GO:0006886 - intracellular protein transport [Evidence IEA]; GO:0048227 - plasma membrane to endosome transport [Evidence ISS]; GO:0015031 - protein transport [Evidence IEA]; GO:0007046 - ribosome biogenesis [Evidence IEA]; GO:0006364 - rRNA processing [Evidence IEA]; GO:0007264 - small GTPase mediated signal transduction [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 product : RAB11a, member RAS oncogene family protein_id : NP_059078.2

name	F730015K02Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149260036 GeneID:319526 MGI:2442199
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001487845.1

name	AI115600 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149260034 GeneID:102442 MGI:2142979
definition	codon_start : 1 product : hypothetical protein LOC102442 protein_id : XP_001476309.1

name	LOC100039976 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039976
definition	number : 5 pseudo : _no_value

name	LOC100039976 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039976
definition	number : 4 pseudo : _no_value

name	LOC100039976 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039976
definition	number : 3 pseudo : _no_value

name	LOC100039976 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039976
definition	number : 2 pseudo : _no_value

name	LOC100039976 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039976
definition	number : 1 pseudo : _no_value

name	LOC100040009 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100040009
definition	number : 3 pseudo : _no_value

name	LOC100040009 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100040009
definition	number : 2 pseudo : _no_value

name	LOC100040009 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100040009
definition	number : 1 pseudo : _no_value

name	LOC621763 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149260025 GeneID:621763
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 46 ESTs, 3 Proteins product : similar to DnaJ (Hsp40) homolog, subfamily C, member 17 pseudo : _no_value transcript_id : XR_032501.1

clone name	MSMg01-123N24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-183C07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-057A18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-498C13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-426N14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-303M04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-160K14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-459G06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-082C23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-276H09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-519I04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-269H11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-438N18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-169E05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-370C08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-128E12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-445N05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-324O22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-529G21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-468A14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-396P14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-079O02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-132C05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-328D15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-478J13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-315E12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-526G17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-464C04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-119H18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-063L15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-359J06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-190N17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-339O09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-547O03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-149A11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-437F22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-422A20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-305N11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-329L11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-305L11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-288K07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-298M03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-340M13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-359K09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-509E19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-466M09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-140E02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-084O17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-517A20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-440C10
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-393A05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-124E24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-331K18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-510M04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-047K01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-508J12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-153B13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-333B13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-386J24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-070L19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-074N05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-325N10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-346O13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-342A05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-132G16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-084I15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-291K15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-320E08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-480D17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-479G06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-303H13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-331H23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-381K07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-063A13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-490G10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-061A11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-092I22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-367N05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-390N01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-388D24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-162K05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-415B09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-452C17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-459H20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-516G13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-465P15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-207K21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-006O01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-310G11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-070L04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-019K05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-312G22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-218N22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-079D13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-146O13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-009K15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-345C04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-119C14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-122D06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-076E22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-232A02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-008N07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-043N05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-101L04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-330F04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-112P12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-071D15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-328A22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-088H06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-004D10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-152J18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-310B05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-342G05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-208C21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-137D21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-298J11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-069L24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-309J05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-180K15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-057P19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-263F19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-067L16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-266J04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-339P03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-157N07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-115I11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-032D11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-018A02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-329G20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-291K24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-072N09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-076G08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-022C01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-160F17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-090D07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-221L03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-281B22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-341M02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-185L20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-131F07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-010D22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-100N07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-173J05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-159L11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-093G21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-275K21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-073G23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-152M23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-052N15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-323I14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-243L20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-243E07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-329M04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-206P20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-007O11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-007O03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-289D02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-232J22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-222G24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-074B07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-293C18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-058E07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-309N03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-149M13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-151M12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-283N08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-238H11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-103M09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-095J17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-248M16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-100G10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-276F09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-268P16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-319J14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-111A08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-152H06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-071O14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-085H01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-284B10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-347L08
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-393A05.T7 (MSMg01no393_a05.b1)	MSMg01-393A05.TJ (MSMg01no393_a05.g1)
ACC	AG494412	AG494413
length	763	1,274
length of high quality (start - end)	488 (33 - 520)	---
definition	CHROMAT_FILE: MSMg01no393_a05.b1 PHD_FILE: MSMg01no393_a05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:37:45 2005	CHROMAT_FILE: MSMg01no393_a05.g1 PHD_FILE: MSMg01no393_a05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:37:45 2005
singlet/doublet	singlet	---
BLAST hit	unique	no hit data
sequence	XXXXXXXXXXXXXXXXXXXXXXXTTTCAGGATCCGCGGAATTCCTGGCGG CTCCCGCTTTGAGGAATCCTCAGGCCTTATCTCCTAGTGATATATACTGA CATGTTTATGGATGAAATAACATGCCTGGCATTTGCTTCAAAAACACCCA GTTGCCAGGAGAGGCAGAAAGTTTGCATAAGGAACAAAATTGGCCTTGAC TGACAGACAGTGGCTAAGTAGGTGATCAAAACGCAGCGCCCCTCACACTG GACTTTCTGCTTTCTGTAAGGAAATGCCCTGTCAGAGCTGGAGCTCAGAG CTCCATGCCTAACACAGCATGAGGGCCTGGTTTCCATTTGTCCCCAATAT CATGTTTTTAAAAACCTGGCCATGGTGTGGGCTCCATGGCTCAGCAGGGT AAAGATCTTGTTCTGAAAATCTTACGCATGCATTGTGAGTTCCATCCCCT GATCTCACAGCTGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGA AGGAAGGAAGGAAGGAAGGAAGGAAGGANANNNGGAAAGGAGGAAGGAAG GAAAAAGAGAGAAAGAAAGAAGAAGAAAAAAAGAAAAAGAAAGAAAGAAA AGAGGAAAGAAAAGAGGAGAGAGGGGGAAAAAAANAAAAAAAGAAAAGAA AAAAGAGATGAAAATGAGAAAATAGAGAAAAAATTATAGAAGAAAAGTGG AATATTTTTTTTATTTTTATTTTTATTATTATTAAATGTATTATATATAT AAAATTTTTATTN	TTTTAATTCTGGTGTATGTGNNCGATAATNTTATCATACATACACTAGNA AGAACGAGNCACACAACAATATCCTCATTATGTTCTTCTTGTTATATCTC GTTATAATATCAAACTAACAACTTATAATACAATAAATTCACATCACACT AAACATCCCTCACATATTATATAATATCATCCTATATATACCACATCTAT CATTACTATATTTATAAATAATTTATATATATAATACTAATTAATATATA TAAACGTAATTTTAGTATAAGATAGTCGATACTTTCGTAATCGATCGGTA AATTCGCATCATCATATTAATATATATAATCACCAACACTAAATTCTTTA TATCAATATTAACTCCTCCCTATACTATTGTGTACAACTACACTGAGATA TAATACCTTATTATAGTTAAATCTATCATGTATATATATATACTTATCAG AATACATCATTTACGGTTATATTTCATCTATACAACAATCACTACTATAA TCGTACAATATAAACCATATTCTAACCTTTATCATTTCTATTATTTTTCC TCGTGAGACTCATCTCATATTCTGTTATCTATAAGATCACTATCTGCATC ATTATAATAATAATAATTATATATCTATAATCATATATATCCTAACATAC ATAATACATTCTCATCACTCCACTATACTTCATTATTATTCTACCAATAA ATAAAACTCACGTCATATCTACTCAATATATTATAGATATATATATTATT TCATATACTCCCACCTCTTATCATACATCTTACAAACACACATACCTATT ATATCTACTCACTTTTNTTCTACACCTAAATTTACTGTTCTTACACACAC ACACTTCACAAATACTTATATTCTATTTATATAATAAACAATCAACTATA TAATCACACATACTACATATCTATTATTCTACATAACACCTATAATCTAC TACCACCTATATAATTAGCATATTAATAAACAATACAATCAACATAAACA TATAACTAAACAATAATAATGCTATCATACATATACTATAATAATACAAA TACACTATACACACATATATACATTCTATATACATCATATATTCCATATT ACANGATACGATCAACTCTCTATAATTAAATCTANATATATATAAACTTA CAAATAAAAACAATACATAAAACTTACCAACATACAAACCAATACAAACC ATACTCATGACATTCAAATATATCATCCCAAAATAACCTAACTCATATAT CACTTTGATCTTCATTATACACTA
quality values	Open. Hide. 12 15 15 16 17 10 9 9 15 16 34 34 34 23 17 20 17 17 25 34 22 22 10 10 10 11 11 11 9 13 9 10 10 19 27 37 48 36 36 36 42 50 36 48 48 48 59 46 50 27 27 12 14 9 9 9 13 19 34 37 37 50 50 29 31 32 36 30 35 48 53 53 53 57 59 59 57 50 53 53 53 53 53 53 57 59 59 50 51 50 50 50 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 68 68 57 57 57 57 57 57 57 57 68 68 68 68 59 59 43 52 52 52 59 59 57 50 50 50 50 50 57 68 59 59 52 52 52 57 57 57 54 57 57 57 57 52 57 52 57 52 57 57 57 57 57 57 57 57 57 52 57 57 68 68 68 68 57 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 62 62 62 62 62 62 62 68 62 62 62 62 62 62 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 59 57 57 57 57 68 68 57 57 57 57 59 59 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 59 68 59 59 68 68 68 59 59 59 59 59 59 68 68 68 68 68 68 68 68 68 68 68 57 59 59 59 59 59 59 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 59 59 59 59 59 59 59 59 59 59 59 57 57 57 53 50 50 48 47 42 42 41 39 44 39 39 39 39 44 44 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 48 48 48 48 59 48 48 48 48 48 48 48 48 43 37 33 31 28 28 28 26 24 19 15 13 10 8 8 8 8 9 11 3 0 3 0 0 0 3 7 8 8 6 6 6 6 6 6 6 6 6 6 6 6 6 8 8 7 8 8 8 8 8 8 8 8 7 6 6 6 6 6 9 9 7 8 6 6 8 6 6 10 7 11 8 8 8 8 8 8 9 7 6 6 6 8 6 8 8 8 8 8 7 7 9 7 7 8 8 8 8 8 8 8 8 8 8 6 6 6 6 6 6 6 8 6 9 7 7 8 8 9 9 7 9 8 6 8 3 0 3 7 7 11 8 8 8 8 8 10 8 6 6 6 8 7 8 10 12 7 7 9 8 8 8 11 10 10 10 10 10 10 10 10 8 8 8 9 8 8 8 8 8 8 8 13 9 8 7 9 7 6 9 10 8 8 8 8 9 8 8 8 9 9 9 9 9 9 9 8 10 11 9 8 8 8 8 8 8 8 11 16 13 13 8 11 12 8 7 6 8 12 19 22 17 15 11 11 11 10 9 9 9 9 12 10 14 8 8 8 8 6 8 8 8 8 10 8 9 9 12 9 8 8 8 8 3 0	Open. Hide. 7 7 6 6 6 8 8 8 6 6 6 8 8 8 7 6 6 6 6 3 0 0 3 8 8 8 8 9 3 0 3 6 6 7 6 6 6 6 6 6 6 6 6 6 6 6 6 3 0 3 6 6 6 8 7 7 9 3 0 3 9 9 7 6 8 7 7 7 6 8 8 8 8 8 6 6 6 6 8 10 9 7 7 6 6 6 8 10 7 6 6 6 8 8 13 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 6 7 8 8 7 7 6 8 8 8 8 8 8 8 10 8 8 8 13 10 10 6 6 8 8 8 8 10 10 9 11 13 17 23 25 33 28 14 16 10 15 10 11 11 10 8 8 8 8 6 6 6 6 11 8 10 10 10 10 10 11 11 16 13 14 10 10 11 10 10 10 10 8 8 8 8 9 10 10 9 8 8 8 8 8 8 6 6 6 6 6 6 8 8 8 8 8 8 8 8 6 8 6 6 6 6 8 6 11 11 12 10 8 8 10 8 8 8 10 10 9 8 8 9 6 6 6 6 8 6 8 8 8 9 10 8 10 8 8 6 6 7 7 6 6 8 8 9 10 10 8 7 7 7 10 10 13 9 9 9 9 9 10 10 10 10 10 10 10 10 8 8 8 8 9 8 9 10 10 10 9 9 9 10 6 6 6 6 6 8 10 11 9 6 8 6 6 6 6 6 6 8 10 10 9 8 8 6 6 6 6 8 8 8 8 8 9 13 8 6 6 6 6 7 9 10 10 6 6 6 10 13 8 8 8 8 10 15 10 16 10 10 10 10 10 10 8 8 8 8 8 8 8 8 9 9 13 8 8 9 9 9 10 10 11 8 8 10 6 6 6 6 6 6 6 8 6 6 8 6 10 15 12 8 8 8 8 8 8 8 6 7 7 9 10 10 10 10 7 7 8 7 10 8 8 8 8 10 10 10 8 8 8 8 8 10 8 9 9 8 8 11 10 12 6 6 8 8 8 8 8 8 8 8 10 9 9 10 9 9 9 10 10 13 15 14 15 15 10 10 9 8 6 6 6 7 7 13 11 8 8 8 8 8 8 8 8 6 8 6 6 10 6 6 8 7 6 8 8 8 8 10 12 8 8 8 9 9 9 9 8 8 6 6 6 7 6 7 7 12 11 12 13 10 11 10 8 6 6 6 6 8 8 10 6 6 6 6 8 8 13 11 11 11 6 6 9 9 10 9 9 12 12 10 11 11 13 8 8 8 8 7 7 7 7 7 6 6 6 6 6 6 6 6 6 6 8 6 6 6 8 8 6 6 6 8 6 10 8 6 6 6 8 6 9 9 12 13 8 8 8 10 8 10 11 10 11 10 10 9 9 9 9 10 10 9 9 13 10 11 8 7 6 6 6 8 12 13 13 10 8 8 8 8 8 8 8 8 8 8 8 8 10 8 8 8 13 10 10 10 8 8 8 10 8 6 6 8 6 8 10 10 8 8 8 7 7 6 9 6 9 10 10 15 10 10 9 8 10 8 8 8 8 11 7 7 7 6 8 8 8 8 8 8 10 8 8 8 8 8 8 8 10 10 16 10 8 8 8 8 8 8 11 11 16 8 8 8 7 7 7 7 8 8 10 10 10 10 10 10 10 10 10 10 11 8 8 8 8 8 10 7 7 6 8 6 9 8 16 8 11 8 8 8 8 8 8 6 6 6 6 8 6 8 6 6 6 6 12 10 16 11 10 8 8 8 8 8 8 8 8 8 8 9 8 8 8 8 8 8 7 7 7 7 8 6 8 8 9 9 13 12 9 9 8 8 9 8 8 8 8 8 8 8 7 7 6 8 8 10 8 8 8 8 10 3 0 3 11 9 10 8 8 8 10 8 8 8 8 8 8 8 8 8 8 9 9 7 10 7 7 7 6 8 8 8 6 9 8 10 8 8 6 6 8 8 8 8 8 10 8 10 8 8 8 8 13 12 12 6 6 8 10 10 10 10 10 11 11 12 9 9 9 11 15 20 15 17 8 8 8 8 8 8 10 8 10 11 8 8 8 8 8 7 9 9 9 9 8 8 8 8 10 10 10 8 8 6 6 8 8 8 8 8 8 6 6 6 6 6 6 6 6 7 11 13 8 8 8 8 8 16 15 11 10 14 9 10 8 10 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 6 6 6 6 10 10 11 10 10 8 8 12 12 9 8 13 8 9 10 19 15 17 12 10 8 8 8 8 8 13 17 11 7 6 6 6 8 8 6 6 8 6 8 8 8 8 8 8 6 6 6 6 8 8 8 10 10 15 9 9 10 9 9 10 10 15 14 14 10 15 10 10 8 8 8 8 8 13 10 8 6 8 6 6 8 8 10 19 15 8 8 8 8 10 10 11 12 12 9 7 7 7 8 8 8 10 9 11 8 8 8 9 9 8 8 10 8 13 7 7 8 8 8 8 9 8 8 8 8 8 8 3 0 3 7 8 7 6 6 6 10 10 10 7 6 6 6 6 6 8 10 8 10 8 8 8 8 10 10 9 11 11 3 0 3 8 8 7 10 7 6 6 6 10 8 10 8 8 8 10 8 7 6 6 6 7 10 11 10 9 9 10 13 10 10 10 10 10 11 9 8 8 6 8 6 6 8 8 8 8 8 13 8 8 8 10 10 10 13 10 10 10 12 12 8 6 6 6 6 6 10 8 8 8 8 9 9 9 9 9 10 15 13 10 10 10 10 16 16 16 11 11 8 8 8 8 8 8 8 8 8 9 8 8 8 13 10 8 8 6 6 10 10 8 8 10 10 12 8 8 13 10 9 11 11 7 6 8 8 8 6 6 6 7 10 8 11 10 10 8 8 8 8

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no393_a05.b1 MSMg01no393_a05.b1 CHROMAT_FILE:
MSMg01no393_a05.b1 PHD_FILE: MSMg01no393_a05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:37:45 2005
         (488 letters)



>mm_chr9_63764966_63765852
          Length = 887

 Score =  833 bits (431), Expect = 0.0
 Identities = 472/487 (96%), Gaps = 6/487 (1%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattcctggcggctcccgctttgaggaatcctcaggccttatctcctagtgatatatac 65
           ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 206 gaattcctggcggctccagctttgaggaatccttaggccttatctcctagtgatatatac 265

                                                                       
Query: 66  tgacatgtttatggatgaaataacatgcctggcatttgcttcaaaaacacccagttgcca 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 tgacatgtttatggatgaaataacatgcctggcatttgcttcaaaaacacccagttgcca 325

                                                                       
Query: 126 ggagaggcagaaagtttgcataaggaacaaaattggccttgactgacagacagtggctaa 185
           |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct: 326 ggagaggcagaaagtttgcataaggaacgaaattggccatgactgacagacagtggctaa 385

                                                                       
Query: 186 gtaggtgatcaaaacgcagcgcccctcacactggactttctgctttctgtaaggaaatgc 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 386 gtaggtgatcaaaacgcagcgcccctcacactggactttctgctttctgtaagaaaatgc 445

                                                                       
Query: 246 cctgtcagagctggagctcagagctccatgcctaacacagcatgagggcctggtttccat 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 cctgtcagagctggagctcagagctccatgcctaacacagcatgagggcctggtttccat 505

                                                                       
Query: 306 ttgtccccaatatcatgtttttaaaaacctggccatggtgtgggctccatggctcagcag 365
           |||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct: 506 ttgtccccaatatcatgttttttaaaacctggccatggtgtgggccccatggctcagcag 565

                                                                       
Query: 366 ggtaaagatcttgttctgaaaatcttacgcatgcattgtgagttccatcccctgatctca 425
           | |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 566 g-taaagatcttgttctgaaaatcttacgcatgcatcgtgagttccatcccctgatctca 624

                                                                       
Query: 426 cagctg-aaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaa---ggaa 481
           ||| || ||||||||||||||||||||||||||||||||||||||||||||||   ||||
Sbjct: 625 cag-tggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaacaaggaa 683

                  
Query: 482 ggaagga 488
            ||||||
Sbjct: 684 agaagga 690


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 70
Number of extensions: 26
Number of successful extensions: 26
Number of sequences better than 10.0: 1
Number of HSP's gapped: 22
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 887
Length adjustment: 10
Effective length of query: 478
Effective length of database: 877
Effective search space:   419206
Effective search space used:   419206
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information