BAC Information

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BAC

Clone NameMSMg01-393K01
Chromosome9 (Build37)
Map Location 35,232,296 - 35,232,407
singlet/doubletsinglet
Overlap genenone
Upstream geneKirrel3, St3gal4, Dcps, Tirap, Foxred1, Srpr, C030004A17Rik, Rpusd4, EG434394
Downstream geneCdon, Ddx25, Pus3, EG627480, LOC100042442, Svs7, Gm846, D730048I06Rik, 9230110F15Rik, LOC100041605, 9230113P08Rik, EG546123, LOC100041618, LOC100042485
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-393K01.T7 (MSMg01no393_k01.b1)MSMg01-393K01.TJ (MSMg01no393_k01.g1)
ACCAG494878AG494879
length774861
length of high quality
(start - end)
487 (66 - 552)115 (62 - 176)
definitionCHROMAT_FILE: MSMg01no393_k01.b1 PHD_FILE: MSMg01no393_k01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:38:38 2005CHROMAT_FILE: MSMg01no393_k01.g1 PHD_FILE: MSMg01no393_k01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:38:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GTGXXXXXXXXXXXXXXXXXXXXXXTTCAGGATCCGCGGAATTCTCACCT
GAGGTATCCCGAATGGCAGAGAAGCACCTGAAAAAATGTTCAACATCCTT
AATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCACCTCACAC
CAGTCAGAATGGCTAAGGTAAAAAATTCAGGTGACAGCAGATGCTGGCGT
GGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATTGCAGGCT
TGTACAACCACTCTGGAAATCAGTCTGGTGGTTCCTCAGAAAATTGGACA
TAGTACTACCGGAGGATTCTGCAATACCTCTCCTGGGCATATATCCAGAA
GATGTCCCAAATGGTAAGAAGGACACATGCTCCACTATGTTCATAGCAGC
CTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAG
AGGAATGGATACAGAAAATGTGGTACGTTTACTCAATGGAGTACTACTCA
GCTATTAAAAAGAATGAATTTATGAAATTCCTAGGCAAATGGATGGACCT
GTAGGGCATCATCCTGAGTGAGGTAACCCAATCATACAAGACCTCACACT
ATATGTACTCACTGATAAGCGGATATTAGCCCCGACATTTTAGAATACCT
AAGATACAATTTTGCTAACTCCTGAAATTTGAAAACCAAAGGAAGACCAA
ATTGGGGCATCTTTGGCCCCTTCTTAAAATGGGGAAAAAAACTGCCTCCT
GTTGGCGGTTTTCGATTTTATTTT
GTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXCATTAGCGAGCACCTGAGGAATTTCTGCCCTGCAGTGCC
TTTTTTGTATGTGTGTATGTGTATGCGTGGAGAGGGAGCAGCACTGAGTA
GTGAATGGGAGGGGGAGTAGAGGCGCCGTCGATTCTCGCTTTTTCTACGT
CTTCTTCCTCTCCTTCCTCTTCTCTCCTCCTTTGTCCCCACCCCTTTCTT
CTGTCTCCTCTCTCTTCTTTCTTTAGTTTCTCCTCTTTCTCCTCTCCCCT
CTCCCCTTCCTTCCTCTTTTTTTTTTTTCTTTCGCCTTTTTTTTTTCTCC
CCCCTCCTTTTTTTCTCCTCCCTCTCTTTTTTTCTCCCCTTTTCCTTTTC
TTCTCTCTTTCTTTTCTCCCCCCCCCCCCTTTCTTCTACCCCTCTCTTTC
CCTTTTCCTCTTCTTTCCTTCTTCTCCTTTTTTCTTTTTTCTTCTCTCTC
CTTCTTTCCTCTCCTTCCCTTTTTTTCCTTCTTTTCCCCCTCCTTCCTTT
CCCTCCCCTCTTCCCCTTTTCTTTTTCTCTTTCCCCTTTCTTTCTCTCCC
TCCTTTCTCTTTTCCTTTTCTTTCCCCCCTCTTCCCTCTTTCCTCCCTTC
CTTTCCTCTCCTTCTTTTCTTCTCTCTTCTCTCCTCTTCCTTCCCTCCCC
CTCCCTTTCCTCTTCTCTTTCCCTTTTTTCCTCTTCTCCCTTCTTTTTCC
CCTTTTTTTCTCATTTTTCTTCTTTTCTCCTCCTTCCTTCCTTCTCTCTT
CTCTCTCCCCCTCTTCTCTCTCCCCCTCTTCCCTCCTCCTATCTTCTCCT
TCTCCCTCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no393_k01.g1 MSMg01no393_k01.g1 CHROMAT_FILE:
MSMg01no393_k01.g1 PHD_FILE: MSMg01no393_k01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:38:38 2005
         (115 letters)



>mm_chr9_35232096_35232610
          Length = 515

 Score =  217 bits (112), Expect = 2e-61
 Identities = 112/112 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cattagcgagcacctgaggaatttctgccctgcagtgccttttttgtatgtgtgtatgtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cattagcgagcacctgaggaatttctgccctgcagtgccttttttgtatgtgtgtatgtg 260

                                                               
Query: 61  tatgcgtggagagggagcagcactgagtagtgaatgggagggggagtagagg 112
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatgcgtggagagggagcagcactgagtagtgaatgggagggggagtagagg 312


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 115
Length of database: 515
Length adjustment: 8
Effective length of query: 107
Effective length of database: 507
Effective search space:    54249
Effective search space used:    54249
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)