Query= MSMg01no393_l15.b1 MSMg01no393_l15.b1 CHROMAT_FILE:
MSMg01no393_l15.b1 PHD_FILE: MSMg01no393_l15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:38:47 2005
(486 letters)
>mm_chr9_8013351_8014236
Length = 886
Score = 919 bits (475), Expect = 0.0
Identities = 481/483 (99%)
Strand = Plus / Minus
Query: 4 ggaattcttcttcatcactgaagagctctatgatctgagcaaatcacacacagcagtata 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 ggaattcttcttcatcactgaagagctctatgatctgagcaaatcacacacagcagtata 627
Query: 64 tccaagaagcctctgtgacgaagggaattgtcccatataagccctacacaatgcctcagt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 tccaagaagcctctgtgacgaagggaattgtcccatataagccctacacaatgcctcagt 567
Query: 124 ggcagccacatggatgaagttccaagtgccttgagcagctgtcctatcaaacagcactga 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 ggcagccacatggatgaagttccaagtgccttgagcagctgtcctatcaaacagcactga 507
Query: 184 acaacttcctggaacttaaggttctgcctccgagcttgcttgccttttagttacaaagca 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 acaacttcctggaacttaaggttctgcctccgagcttgcttgccttttagttacaaagca 447
Query: 244 cggccattccaactcgtagcaaatgcatgggcttcacagaagaaagcaagctcttacgtc 303
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 ctgccattccaactcgtagcaaatgcatgggcttcacagaagaaagcaagctcttacgtc 387
Query: 304 cccccaaaaacagattactggagaatgtgatgtgagtttgtgcagatagagaagcagaca 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 cccccaaaaacagattactggagaatgtgatgtgagtttgtgcagatagagaagcagaca 327
Query: 364 tggagtaatcagtataaatgatggtgtgtactccgtgccattagctgaagaggactcaga 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tggagtaatcagtataaatgatggtgtgtactccgtgccattagctgaagaggactcaga 267
Query: 424 actgtagcaggatgacaagggttgaggagtggccggagtcaaggttatgtaactgctatt 483
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 266 actgtagcaggatgacaagggttgaggagtggccggagtcagggttatgtaactgctatt 207
Query: 484 aag 486
|||
Sbjct: 206 aag 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 886
Length adjustment: 10
Effective length of query: 476
Effective length of database: 876
Effective search space: 416976
Effective search space used: 416976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no393_l15.g1 MSMg01no393_l15.g1 CHROMAT_FILE:
MSMg01no393_l15.g1 PHD_FILE: MSMg01no393_l15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:38:48 2005
(417 letters)
>mm_chr9_7900935_7901751
Length = 817
Score = 760 bits (393), Expect = 0.0
Identities = 411/417 (98%), Gaps = 1/417 (0%)
Strand = Plus / Plus
Query: 1 tcagccagaaactccagccaaacctgtcctctaccccagattcgggcaggttgagacaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcagccagaaactccagccaaacctgtcctctaccccagattcgggcaggttgagacaaa 260
Query: 61 cagcgttctctaagaagagtgaaataaaacaaggtgtaccttggaaacacccatgcctga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagcgttctctaagaagagtgaaataaaacaaggtgtaccttggaaacacccatgcctga 320
Query: 121 ggtctatggcgaaaaagcagcaactacaggaatcctcagagggaaggtttgaactgagtt 180
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 321 ggtctatggcgaaaaagcagcaactacagggatcctcagagggaaggtttgaactgagtt 380
Query: 181 tgtccagcttcccattagcttgggtttttattgttgttttttacaaaaaaggctcctgat 240
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 381 cgtccagcttcccattagcttgggtttttattgttgttttttacaaaaa-ggctcctgat 439
Query: 241 ttagctcgagatggcctggaactctaccctcctgcctcagcctcctgagtgctggcctta 300
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ttagctcgagatggcctggaattctaccctcctgcctcagcctcctgagtgctggcctta 499
Query: 301 caagtgcatggcagtgtgtgttggcttaagccccactgtggaaggcagaaaggccgaagt 360
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 500 caagtgcgtggcagtgtgtgttggcttaagccccactatggaaggcagaaaggccgaagt 559
Query: 361 gcttgactcagaactagcaagtctacagaaatctcttctcatatcagagcatcatcg 417
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gcttgactcagaactagcaagtctacagaaatctcttctcatatcagagcatcatcg 616
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 417
Length of database: 817
Length adjustment: 9
Effective length of query: 408
Effective length of database: 808
Effective search space: 329664
Effective search space used: 329664
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
