XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CACAACCAGGGAAGGCAGAGTCTGCCTCATACAGGTGTGTATATTTTTCC
CTCCTTTGTTCTGACCTTGAGGGAACCTCCCTGAGACTCCTCAATTGGGC
ACCCTTTGTGTGCACTCCCATTCTCAGGTCACTGCTCTGTCAGGCCGCCT
GCTGAGAGAGCTCCATGCTTCAAGCCTTTTCCTCACTAGATGCCCACTGC
CTTGCTGCAGTCATCTGTATGCTTGGGGGAAGCGCAGGTGACATAGAAGC
ATAAATGCTTAGATACTGAACAGCTCTTGTGCCAGCTTCGGTGGTACAGC
CTGTAACGCCAACGCTCTGGAGATACAAACAGTAGTTCAAGGCCAACCTC
AGCTACTTTGCTAAGACCCTGATTTAAAAAAAAAAAAAAGCAAACGAAAA
GAATAAATAGCTCCCTACTTATTTTTTGATACATATACAGTTCTTTTTTG
TCATATAATTTCATTTCATCTACAAATAAACTTTATAGGATAAATATTCA
CCTGGTTGGGGGGGGACCCCCCCCCCCACCAAACCCAACGGAAAAACCCC
AAATTGGACCCCGATTATCTTTATTTTCTTTTACAAGGCTAACCCATTTC
AAAATGGAAGAAAGAAATTTTCCCCCCCCTTTCCGGGGCTTTTTCCTCCC
CCAAGAGAATTATAATGACCCCGCTTTGTTTTTCCACCCCCTGGAAAAAC
CCCTAGAGGTGGTGTTTATAAAAAAAAAAAAAGCCGGCCCCCTCCC

ATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAGCA
CCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAA
CAACCCTGAGATTCCACCTCACACCAGTCAGAATGTCTAAGATCAAAAAT
TCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCT
CCACTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCCGTCT
GGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCAGCAATA
CCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACAC
ATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGA
AAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTAC
ATCTACACAATGGAGTACTACTCAGCTATTTAAAAGAATGAATTTATGAA
ATTCCTAGCCAAATGGAGGGACCTGGAGGGCTCCTTCCTGAATGAGGTAA
CCCTTTCCAAAGGGACTCCCCCAATATGGATCCCTGGAAAGGGGAAATAA
CCCACAACCCAGGATACCCCGAATATAAAAAAATTTCCTAAACCCTGGAA
CCCCGAAAAAGGAAAATGAAGGGGGGACCTATGCCTCCCTCTCAAAGGGG
AAAAAAACCCCTCTAAGGGGTTAGAAAAA

Query= MSMg01no393_m22.b1 MSMg01no393_m22.b1 CHROMAT_FILE:
MSMg01no393_m22.b1 PHD_FILE: MSMg01no393_m22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:38:55 2005
         (443 letters)



>mm_chr9_74813509_74814351
          Length = 843

 Score =  770 bits (398), Expect = 0.0
 Identities = 427/440 (97%), Gaps = 9/440 (2%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccacaaccagggaaggcagagtctgcctcatacaggtgtgtatatttttccctcc 64
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 488 gaattccacaaccagggaaggcagagtctgcctcatacaggtgtgtgtatttttccctcc 429

                                                                       
Query: 65  tttgttctgaccttgagggaacctccctgagactcctcaattgggcaccctttgtgtgca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tttgttctgaccttgagggaacctccctgagactcctcaattgggcaccctttgtgtgca 369

                                                                       
Query: 125 ctcccattctcaggtcactgctctgtcaggccgcctgctgagagagctccatgcttcaag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ctcccattctcaggtcactgctctgtcaggccgcctgctgagagagctccatgcttcaag 309

                                                                       
Query: 185 ccttttcctcactagatgcccactgccttgctgcagtcatctgtatgcttgggggaagcg 244
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 308 ccttttcctcactagatgcccactgccttgccgcagtcatctgtatgcttgggggaagcg 249

                                                                       
Query: 245 caggtgacatagaagcataaatgcttagatactgaacagctcttgtgccagcttcggtgg 304
           ||||||||||||||||||||| |||||||||||||||||||||| |      ||||||||
Sbjct: 248 caggtgacatagaagcataaacgcttagatactgaacagctctt-t------ttcggtgg 196

                                                                       
Query: 305 tacagcctgtaacgccaacgctctggagatacaaacagtagttcaaggccaacctcagct 364
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 tacagcctgtaatgccaacgctctggagatacaaacagtagttcaaggccaacctcagct 136

                                                                       
Query: 365 actttgctaagaccctgatttaaaaaaaaaaaaaa-gcaaacgaaaagaataaatagctc 423
           |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 135 actt-gctaagaccctgatttaaaaaaaaaaaaaaagcaaacgaaaagaataaatagctc 77

                               
Query: 424 cctacttattttttgataca 443
           ||||||||||||||||||||
Sbjct: 76  cctacttattttttgataca 57


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 443
Length of database: 843
Length adjustment: 10
Effective length of query: 433
Effective length of database: 833
Effective search space:   360689
Effective search space used:   360689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)