BAC Information

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BAC

Clone NameMSMg01-394J05
Chromosome9 (Build37)
Map Location 41,700,003 - 41,700,345
singlet/doubletsinglet
Overlap genenone
Upstream gene4931429I11Rik, Crtam, 2810457I06Rik, LOC628495, LOC100042464, EG667566, 6720432D03Rik
Downstream geneSorl1, Sc5d, Tecta, Tbcel, Grik4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-394J05.T7 (MSMg01no394_j05.b1)MSMg01-394J05.TJ (MSMg01no394_j05.g1)
ACCAG495600AG495601
length857792
length of high quality
(start - end)
39 (74 - 112)343 (82 - 424)
definitionCHROMAT_FILE: MSMg01no394_j05.b1 PHD_FILE: MSMg01no394_j05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:40:00 2005CHROMAT_FILE: MSMg01no394_j05.g1 PHD_FILE: MSMg01no394_j05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:40:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCCTCTCTCTTATTTTGTGTCCGCTATACGACTCCTATTCCGACAGGAT
CCGCGGAATTCCCAGATTTCCACGCTGATGTGATTATATCCCCAATCTGA
GTGGCAGACGAGGGCAATAAAAAGATTTAGGATATCAAATGCGTTTTGTG
CCATGCAGAGACCAATGTATGAGGCTACCCCTCCCTTAAAACAACAAATG
AATCCAAAACCAAAACGTAATACCCATAGAGGACTATAAGGGCTTTGTTT
ATTTTGATCGAATACTTATCCGCGTCCTGGGGAGCTTGCCCCTCACTGCT
GACTAAAGGCAGGTCTGTTTAAAGGTGCTTTATAGTCACTGTTACGCGCA
GTCATTCGTTTAACACCCTACGACCGTCCTATGACCCTACATGCGCTCCA
TCTTTCCTCCTTCTCTTGTTTTCTGACCCACGTCGCCCCTGTTAACTCAC
ACCTTTCTTCTTTTTTCTCACTTCTCTTCCTCCTTCTCCTCCCTTTCCCT
TTCTCCCTCTCCCATCTCCCTTTCTTCCCTTGTATCTTCCCCCCCCCCCC
TATTACCTTCTTCCCCTTCCCCTTCCCCTTTCTTTATCTTCCCCTTTTTC
TTTCCTTTCCTTTCCCCCTTACCTTATCTTCTTCCTCTTCCTCCCACTTT
CCTATCCCTCTACCTTCCCCCTTTTCCCCTCTTTTTCCCCTCTCCTCCCC
CCCTACCCTCTTCATCCATACCACTCATAACATCTCAAAATCCATCCCCT
TCTACCTCTCCTTTTCGCTACCACGCCCCATTATAAATGTCCATATACCC
TTTTTCCTATCCCCCCACTCTCTTACCATCCTCCCACATTTATTCACCCC
CCGCTCC
TTTTTCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTAAAATTAACACTTAAAA
AACAGTGTTGGGTTAAAGAGAAGGCACATTTTAAATTTCAATAGACTTGG
CTAAATCTCTAAACAAAAACAAAAACAAAAAAAAAAACTGACACCAATTT
GCAATACATTCAAGAATGCTAGCTGTTTATGTTATGTGTATGATGGTGTA
CGAATACCTGACTACTTCTGCACACAGACCACCAGAGTGTTTACGGAGCG
ACCAGGAGAAAATCTGATGAGGTACCTGTCCATCTGTCTGTTTCAATTTT
GTTTATTTGTTTGCTTTGAAACAGGTCTTGTACAGCCCAGGCTGGCCTGG
AACTCATTATCCATCCACAGCCTCCCAAGTGTTTGTGGTCCAGGTATACG
CCGCCCACACCCTAGAAAACCCAACGTCTTCAGTAACAACATCTAAGTGT
GTTTAACGTTCACTTGTTTTTATTCTGAAATTTATTAAACCATTTTCCAT
AGGTTTGTTCATCAAGCCCTACCGATTTGAAGAGAATTCTCTCTAAATTT
GGCAAAGTTTCTTATCTTCCAACCTATCTTCTCTCCAACTAAGAAAAAGC
CTACCCCTTGTTCCAGTTAGTTATGAAAATCCTTTACCGTTTTAACACTC
TCCATTATTCCCCCTCTCACTTTCATTTAACAATCACCCCTCTAATACCC
TCTCCTAACATTAAAAATCCCACCTCTTATATTCCACCTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no394_j05.g1 MSMg01no394_j05.g1 CHROMAT_FILE:
MSMg01no394_j05.g1 PHD_FILE: MSMg01no394_j05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:40:00 2005
         (343 letters)



>mm_chr9_41699803_41700545
          Length = 743

 Score =  663 bits (343), Expect = 0.0
 Identities = 343/343 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctaaaattaacacttaaaaaacagtgttgggttaaagagaaggcacattttaaatttcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctaaaattaacacttaaaaaacagtgttgggttaaagagaaggcacattttaaatttcaa 260

                                                                       
Query: 61  tagacttggctaaatctctaaacaaaaacaaaaacaaaaaaaaaaactgacaccaatttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tagacttggctaaatctctaaacaaaaacaaaaacaaaaaaaaaaactgacaccaatttg 320

                                                                       
Query: 121 caatacattcaagaatgctagctgtttatgttatgtgtatgatggtgtacgaatacctga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caatacattcaagaatgctagctgtttatgttatgtgtatgatggtgtacgaatacctga 380

                                                                       
Query: 181 ctacttctgcacacagaccaccagagtgtttacggagcgaccaggagaaaatctgatgag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctacttctgcacacagaccaccagagtgtttacggagcgaccaggagaaaatctgatgag 440

                                                                       
Query: 241 gtacctgtccatctgtctgtttcaattttgtttatttgtttgctttgaaacaggtcttgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtacctgtccatctgtctgtttcaattttgtttatttgtttgctttgaaacaggtcttgt 500

                                                      
Query: 301 acagcccaggctggcctggaactcattatccatccacagcctc 343
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acagcccaggctggcctggaactcattatccatccacagcctc 543


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 743
Length adjustment: 9
Effective length of query: 334
Effective length of database: 734
Effective search space:   245156
Effective search space used:   245156
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)